JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNR2_chr1_23865515_23918362	0/0	t0027	4188	2	2	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0028	4189	2	2	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0029	4182	1	1	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0030	4182	1	1	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0031	4186	1	1	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0032	4188	1	1	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0033	4189	1	0	1	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0034	4186	1	1	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0035	4191	1	0	0	1	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0036	4189	1	0	0	0	1	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0037	4180	1	1	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0038	4187	1	0	1	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0039	4189	1	0	0	0	0	1	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0040	4189	1	0	0	0	1	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0041	4187	1	1	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0042	4189	1	1	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0043	4189	1	0	1	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0044	4192	1	1	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0045	4192	1	1	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0046	4190	1	0	1	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0047	4192	1	1	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0048	4190	1	1	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0049	4189	1	0	0	0	0	1	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0050	4192	1	1	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0051	4188	1	0	0	1	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0052	4190	1	0	0	0	0	1	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0053	4189	1	1	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0054	4184	1	1	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0055	4184	1	0	0	1	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0056	4185	1	0	0	1	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0057	4182	1	1	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0058	4182	1	0	0	1	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0059	4183	1	0	0	1	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0060	4184	1	0	1	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0061	4181	1	0	0	1	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0062	4183	1	1	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0063	4184	1	1	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0064	4186	1	0	0	0	0	1	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0065	4187	1	0	1	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0066	4182	1	0	0	0	0	1	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0067	4189	1	0	1	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0068	4188	1	1	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0069	4190	1	1	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0070	4188	1	1	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0071	4199	1	1	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0072	4189	1	0	1	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNRIP1_chr2_68288010_68324949	1/1	t0001	1402	375	75	60	178	16	44	copy fasta	CNRIP1	chr2	68288010	68324949
CNRIP1_chr2_68288010_68324949	0/0	t0002	1402	23	0	12	9	0	2	copy fasta	CNRIP1	chr2	68288010	68324949
CNRIP1_chr2_68288010_68324949	0/0	t0003	1402	13	12	1	0	0	0	copy fasta	CNRIP1	chr2	68288010	68324949
CNRIP1_chr2_68288010_68324949	0/0	t0004	1402	8	7	1	0	0	0	copy fasta	CNRIP1	chr2	68288010	68324949