JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNRIP1_chr2_68288010_68324949	0/0	t0005	1402	2	0	2	0	0	0	copy fasta	CNRIP1	chr2	68288010	68324949
CNRIP1_chr2_68288010_68324949	0/0	t0006	1402	1	1	0	0	0	0	copy fasta	CNRIP1	chr2	68288010	68324949
CNRIP1_chr2_68288010_68324949	0/0	t0007	1402	1	1	0	0	0	0	copy fasta	CNRIP1	chr2	68288010	68324949
CNRIP1_chr2_68288010_68324949	0/0	t0008	1402	1	0	0	1	0	0	copy fasta	CNRIP1	chr2	68288010	68324949
CNST_chr1_246561456_246673595	0/0	t0001	2950	133	36	28	50	9	10	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	1/1	t0002	2950	67	4	23	24	4	10	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	t0003	2950	53	7	13	19	3	11	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	t0004	2950	26	24	2	0	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	t0005	2950	5	4	1	0	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	t0006	2950	3	3	0	0	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	t0007	2950	3	0	0	3	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	t0008	2950	3	3	0	0	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	t0009	2950	3	3	0	0	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	t0010	2950	3	0	0	3	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	t0011	2950	3	1	1	1	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	t0012	2950	2	0	2	0	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	t0013	2950	2	2	0	0	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	t0014	2950	2	0	0	2	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	t0015	2950	2	2	0	0	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	t0016	2950	1	0	1	0	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	t0017	2950	1	0	1	0	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	t0018	2950	1	0	0	1	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	t0019	2950	1	0	0	0	0	1	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	t0020	2950	1	1	0	0	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	t0021	2950	1	1	0	0	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	t0022	2950	1	0	0	0	0	1	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	t0023	2950	1	1	0	0	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	t0024	2950	1	0	0	0	0	1	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	t0025	2950	1	0	0	1	0	0	copy fasta	CNST	chr1	246561456	246673595
CNTD1_chr17_42793861_42816587	1/1	t0001	2260	217	73	40	70	9	23	copy fasta	CNTD1	chr17	42793861	42816587
CNTD1_chr17_42793861_42816587	0/0	t0002	2260	66	1	8	47	3	7	copy fasta	CNTD1	chr17	42793861	42816587
CNTD1_chr17_42793861_42816587	0/0	t0003	2260	12	2	0	6	0	4	copy fasta	CNTD1	chr17	42793861	42816587
CNTD1_chr17_42793861_42816587	0/0	t0004	2260	3	0	0	3	0	0	copy fasta	CNTD1	chr17	42793861	42816587
CNTD1_chr17_42793861_42816587	0/0	t0005	2260	2	0	0	2	0	0	copy fasta	CNTD1	chr17	42793861	42816587
CNTD1_chr17_42793861_42816587	0/0	t0006	2260	1	1	0	0	0	0	copy fasta	CNTD1	chr17	42793861	42816587
CNTD1_chr17_42793861_42816587	0/0	t0007	2260	1	0	0	1	0	0	copy fasta	CNTD1	chr17	42793861	42816587
CNTD1_chr17_42793861_42816587	0/0	t0008	2260	1	0	0	1	0	0	copy fasta	CNTD1	chr17	42793861	42816587
CNTD1_chr17_42793861_42816587	0/0	t0009	2260	1	0	0	1	0	0	copy fasta	CNTD1	chr17	42793861	42816587
CNTD1_chr17_42793861_42816587	0/0	t0010	2260	1	1	0	0	0	0	copy fasta	CNTD1	chr17	42793861	42816587
CNTD1_chr17_42793861_42816587	0/0	t0011	2260	1	0	0	1	0	0	copy fasta	CNTD1	chr17	42793861	42816587
CNTFR_chr9_34546433_34594724	1/1	t0001	920	268	71	54	99	14	28	copy fasta	CNTFR	chr9	34546433	34594724
CNTFR_chr9_34546433_34594724	0/0	t0002	920	87	13	6	58	0	10	copy fasta	CNTFR	chr9	34546433	34594724
CNTFR_chr9_34546433_34594724	0/0	t0003	920	31	2	19	5	0	5	copy fasta	CNTFR	chr9	34546433	34594724
CNTFR_chr9_34546433_34594724	0/0	t0004	920	8	7	1	0	0	0	copy fasta	CNTFR	chr9	34546433	34594724
CNTFR_chr9_34546433_34594724	0/0	t0005	920	2	0	0	2	0	0	copy fasta	CNTFR	chr9	34546433	34594724
CNTFR_chr9_34546433_34594724	0/0	t0006	920	2	0	1	0	0	1	copy fasta	CNTFR	chr9	34546433	34594724
CNTFR_chr9_34546433_34594724	0/0	t0007	920	2	2	0	0	0	0	copy fasta	CNTFR	chr9	34546433	34594724
CNTFR_chr9_34546433_34594724	0/0	t0008	920	1	0	1	0	0	0	copy fasta	CNTFR	chr9	34546433	34594724
CNTFR_chr9_34546433_34594724	0/0	t0009	920	1	1	0	0	0	0	copy fasta	CNTFR	chr9	34546433	34594724
CNTF_chr11_58617665_58630733	0/1	t0001	1300	196	58	37	75	7	18	copy fasta	CNTF	chr11	58617665	58630733