JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNTF_chr11_58617665_58630733	1/0	t0002	1300	194	24	31	109	5	24	copy fasta	CNTF	chr11	58617665	58630733
CNTF_chr11_58617665_58630733	0/0	t0003	1300	5	0	4	0	0	1	copy fasta	CNTF	chr11	58617665	58630733
CNTF_chr11_58617665_58630733	0/0	t0004	1300	4	4	0	0	0	0	copy fasta	CNTF	chr11	58617665	58630733
CNTF_chr11_58617665_58630733	0/0	t0005	1300	2	0	0	0	0	2	copy fasta	CNTF	chr11	58617665	58630733
CNTF_chr11_58617665_58630733	0/0	t0006	1300	2	2	0	0	0	0	copy fasta	CNTF	chr11	58617665	58630733
CNTF_chr11_58617665_58630733	0/0	t0007	1300	1	1	0	0	0	0	copy fasta	CNTF	chr11	58617665	58630733
CNTF_chr11_58617665_58630733	0/0	t0008	1300	1	0	0	1	0	0	copy fasta	CNTF	chr11	58617665	58630733
CNTF_chr11_58617665_58630733	0/0	t0009	1300	1	0	0	0	0	1	copy fasta	CNTF	chr11	58617665	58630733
CNTF_chr11_58617665_58630733	0/0	t0010	1300	1	0	0	1	0	0	copy fasta	CNTF	chr11	58617665	58630733
CNTF_chr11_58617665_58630733	0/0	t0011	1300	1	0	0	1	0	0	copy fasta	CNTF	chr11	58617665	58630733
CNTF_chr11_58617665_58630733	0/0	t0012	1300	1	1	0	0	0	0	copy fasta	CNTF	chr11	58617665	58630733
CNTF_chr11_58617665_58630733	0/0	t0013	1300	1	0	0	1	0	0	copy fasta	CNTF	chr11	58617665	58630733
CNTLN_chr9_17130040_17508923	0/1	t0001	1298	124	13	28	65	2	15	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	t0002	1298	54	44	4	5	0	1	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	t0003	1298	8	3	1	4	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	t0004	1298	7	7	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	t0005	1298	5	5	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	1/0	t0006	1298	4	3	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	t0007	1298	4	3	1	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	t0008	1298	2	2	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	t0009	1298	2	0	2	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	t0010	1298	2	0	2	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	t0011	1298	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	t0012	1298	1	0	0	1	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	t0013	1298	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	t0014	1298	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	t0015	1298	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	t0016	1298	1	0	0	1	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTN1_chr12_40687439_41077415	0/0	t0001	2611	91	18	29	36	4	4	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	t0002	2614	41	9	6	20	2	4	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	t0003	2611	19	11	1	4	2	1	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	t0004	2612	15	7	1	6	0	1	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	t0005	2611	12	2	7	1	1	1	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	t0006	2612	10	1	4	3	1	1	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	t0007	2612	10	10	0	0	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	t0008	2612	5	3	2	0	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	t0009	2614	3	0	0	3	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	t0010	2611	3	0	0	3	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	t0011	2611	2	0	1	0	1	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	t0012	2617	2	0	2	0	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	t0013	2611	2	2	0	0	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	t0014	2611	2	2	0	0	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	t0015	2611	1	1	0	0	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	t0016	2612	1	1	0	0	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	t0017	2611	1	1	0	0	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	t0018	2614	1	0	0	0	1	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	t0019	2611	1	1	0	0	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	t0020	2611	1	0	0	1	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	t0021	2612	1	1	0	0	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	t0022	2611	1	0	0	1	0	0	copy fasta	CNTN1	chr12	40687439	41077415