JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNTN1_chr12_40687439_41077415	0/0	t0023	2612	1	0	0	1	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	t0024	2611	1	0	1	0	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	t0025	2614	1	1	0	0	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	t0026	2611	1	1	0	0	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	t0027	2611	1	0	0	1	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN2_chr1_205038212_205083289	0/0	t0001	4794	79	0	16	53	2	8	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0002	4794	73	6	11	51	0	5	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/1	t0003	4794	43	10	17	5	5	5	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0004	4794	40	26	5	9	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0005	4794	29	17	2	2	2	6	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0006	4794	16	1	7	0	4	4	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	1/0	t0007	4794	13	1	3	0	1	7	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0008	4794	11	0	1	8	0	2	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0009	4794	10	9	0	0	1	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0010	4794	7	7	0	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0011	4794	6	4	2	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0012	4794	5	5	0	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0013	4793	4	0	0	4	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0014	4792	4	3	1	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0015	4791	3	0	3	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0016	4794	3	0	2	1	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0017	4794	3	0	0	3	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0018	4794	2	0	2	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0019	4794	2	0	0	2	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0020	4793	1	0	0	1	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0021	4794	1	1	0	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0022	4794	1	0	0	1	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0023	4794	1	1	0	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0024	4794	1	1	0	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0025	4794	1	0	0	1	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0026	4794	1	0	1	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0027	4794	1	0	0	1	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0028	4794	1	1	0	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0029	4794	1	0	0	1	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0030	4794	1	0	0	0	0	1	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0031	4794	1	0	0	1	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0032	4794	1	1	0	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0033	4794	1	1	0	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0034	4794	1	1	0	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0035	4794	1	0	0	1	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0036	4794	1	0	1	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0037	4794	1	0	0	1	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0038	4794	1	0	0	1	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0039	4794	1	0	0	1	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0040	4794	1	0	0	1	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0041	4794	1	0	0	1	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0042	4794	1	0	0	1	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0043	4794	1	0	0	0	0	1	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0044	4794	1	0	0	0	0	1	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	t0045	4794	1	0	0	0	1	0	copy fasta	CNTN2	chr1	205038212	205083289