JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNTN2_chr1_205038212_205083289	0/0	t0046	4794	1	0	0	1	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN3_chr3_74257568_74619659	1/0	t0001	2183	33	1	8	19	1	3	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/1	t0002	2177	32	23	1	5	1	1	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0003	2177	23	5	7	7	1	3	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0004	2183	16	6	3	7	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0005	2186	14	1	4	7	0	2	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0006	2186	13	0	1	9	1	2	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0007	2173	7	7	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0008	2168	3	3	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0009	2180	3	3	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0010	2168	2	2	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0011	2180	2	1	1	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0012	2159	2	2	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0013	2177	2	2	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0014	2177	2	2	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0015	2177	2	2	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0016	2183	2	2	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0017	2192	2	0	2	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0018	2177	2	0	0	0	0	2	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0019	2164	1	1	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0020	2171	1	0	0	0	0	1	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0021	2180	1	0	1	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0022	2167	1	1	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0023	2177	1	1	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0024	2177	1	1	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0025	2180	1	1	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0026	2183	1	0	1	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0027	2179	1	1	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0028	2183	1	1	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0029	2183	1	1	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	t0030	2192	1	0	1	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN4_chr3_2093866_3062959	0/0	t0001	2079	32	15	7	5	1	4	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	t0002	2079	23	7	5	3	1	7	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	t0003	2079	20	14	3	0	0	3	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	t0004	2079	7	4	1	1	0	1	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	t0005	2079	7	2	4	0	0	1	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	t0006	2079	6	3	3	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	t0007	2079	5	4	1	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	t0008	2078	4	3	1	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	t0009	2079	3	3	0	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	t0010	2079	2	2	0	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	t0011	2079	1	0	0	1	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	t0012	2079	1	1	0	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	t0013	2079	1	1	0	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	t0014	2079	1	0	1	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	t0015	2079	1	1	0	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	t0016	2079	1	0	0	1	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	t0017	2079	1	0	0	1	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN5_chr11_99015949_100363885	0/0	t0001	3197	10	4	3	2	0	1	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	t0002	3197	8	1	3	3	0	1	copy fasta	CNTN5	chr11	99015949	100363885