JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNTN5_chr11_99015949_100363885	0/0	t0003	3197	6	3	3	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	t0004	3197	5	3	2	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	t0005	3197	4	3	1	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	t0006	3197	3	1	0	0	0	2	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	t0007	3197	3	3	0	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	t0008	3197	3	3	0	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	t0009	3197	3	0	3	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	t0010	3197	3	2	1	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	t0011	3197	3	2	1	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	t0012	3197	2	0	2	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	t0013	3197	2	2	0	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	t0014	3197	2	0	0	2	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	t0015	3197	1	1	0	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	t0016	3197	1	0	0	1	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	t0017	3197	1	0	0	1	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	t0018	3197	1	0	1	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	t0019	3197	1	1	0	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	t0020	3197	1	1	0	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	t0021	3197	1	0	1	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	t0022	3197	1	0	1	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	t0023	3197	1	0	0	1	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN6_chr3_1088024_1409217	1/1	t0001	979	211	72	46	61	7	23	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	t0002	979	9	2	6	0	1	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	t0003	979	3	1	1	0	0	1	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	t0004	979	3	3	0	0	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	t0005	979	2	0	0	0	0	2	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	t0006	979	1	0	0	1	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	t0007	979	1	0	1	0	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	t0008	979	1	1	0	0	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	t0009	979	1	1	0	0	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTNAP1_chr17_42677531_42704993	1/1	t0001	1383	185	52	34	77	5	15	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	t0002	1383	165	34	30	68	5	28	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	t0003	1383	4	1	3	0	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	t0004	1383	4	4	0	0	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	t0005	1383	1	0	0	1	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	t0006	1383	1	0	0	0	0	1	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	t0007	1383	1	0	0	1	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	t0008	1383	1	0	1	0	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	t0009	1383	1	0	0	1	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	t0010	1383	1	1	0	0	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP2_chr7_146111801_148425998	0/0	t0001	5483	7	7	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	t0002	5453	5	4	0	0	0	1	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	t0003	5454	3	3	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	t0004	5454	3	3	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	t0005	5454	2	2	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	t0006	5454	2	1	1	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	t0007	5483	2	2	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	t0008	5465	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	t0009	5454	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	t0010	5455	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998