Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADD2_chr2_70651784_70773200	0/0	t0014	7111	4	0	0	0	0	4	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0015	7109	3	0	2	0	1	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0016	7106	3	3	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0017	7105	3	0	3	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0018	7108	3	1	2	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0019	7109	3	1	0	2	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0020	7108	3	2	0	1	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0021	7112	2	2	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0022	7110	2	0	2	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0023	7113	2	0	0	2	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0024	7109	2	2	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0025	7107	2	1	0	1	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0026	7111	2	0	1	0	0	1	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0027	7110	2	0	1	1	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0028	7110	2	2	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0029	7112	2	2	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0030	7110	2	2	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0031	7109	2	2	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0032	7112	2	2	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0033	7110	2	2	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0034	7105	2	0	2	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0035	7109	2	0	0	2	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0036	7108	1	1	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0037	7108	1	1	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0038	7105	1	1	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0039	7105	1	0	1	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0040	7108	1	0	0	0	0	1	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0041	7106	1	0	0	1	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0042	7111	1	0	0	1	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0043	7108	1	1	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0044	7106	1	1	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0045	7109	1	1	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0046	7109	1	1	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0047	7106	1	0	0	0	0	1	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0048	7106	1	0	0	1	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0049	7110	1	0	0	1	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0050	7110	1	0	0	1	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0051	7111	1	1	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0052	7110	1	0	0	1	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0053	7108	1	1	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0054	7102	1	1	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0055	7106	1	1	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0056	7110	1	1	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0057	7110	1	1	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0058	7112	1	1	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0059	7108	1	1	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0060	7111	1	0	1	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0061	7106	1	1	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0062	7108	1	0	0	1	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0063	7113	1	0	0	0	0	1	copy fasta	ADD2	chr2	70651784	70773200