JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNTNAP2_chr7_146111801_148425998	0/0	t0011	5453	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	t0012	5455	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	t0013	5464	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	t0014	5453	1	0	1	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	t0015	5454	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	t0016	5453	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	t0017	5452	1	0	0	0	0	1	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	t0018	5453	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	t0019	5453	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	t0020	5441	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	t0021	5454	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	t0022	5453	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	t0023	5459	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP3B_chr9_41885536_42134426	0/1	t0001	3790	26	5	8	6	2	4	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0002	3811	14	1	5	7	0	1	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0003	3811	11	0	4	1	2	4	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0004	3790	7	2	0	4	1	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0005	3811	6	0	1	2	1	2	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0006	3790	6	4	1	0	1	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0007	3811	4	0	0	4	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0008	3790	4	0	1	0	2	1	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0009	3811	4	0	2	0	0	2	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0010	3790	3	3	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0011	3811	2	1	0	0	0	1	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0012	3790	2	0	1	0	0	1	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0013	3811	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0014	3811	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0015	3807	1	0	0	1	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0016	3811	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0017	3811	1	0	1	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0018	3811	1	0	0	1	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0019	3811	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0020	3811	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0021	3790	1	0	0	0	0	1	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0022	3790	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0023	3790	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0024	3790	1	0	0	0	0	1	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0025	3790	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	1/0	t0026	3786	1	0	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0027	3790	1	0	0	0	0	1	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0028	3790	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0029	3790	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0030	3790	1	0	0	0	0	1	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	t0031	3811	1	0	0	0	1	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3_chr9_39059710_39293167	0/1	t0001	9284	1	0	0	0	0	0	copy fasta	CNTNAP3	chr9	39059710	39293167
CNTNAP3_chr9_39059710_39293167	1/0	t0002	9284	1	0	0	0	0	0	copy fasta	CNTNAP3	chr9	39059710	39293167
CNTNAP3_chr9_39059710_39293167	0/0	t0003	9287	1	1	0	0	0	0	copy fasta	CNTNAP3	chr9	39059710	39293167
CNTNAP3_chr9_39059710_39293167	0/0	t0004	9274	1	1	0	0	0	0	copy fasta	CNTNAP3	chr9	39059710	39293167
CNTNAP4_chr16_76272401_76565757	0/0	t0001	2337	87	9	16	50	3	9	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	t0002	2337	45	12	12	5	1	15	copy fasta	CNTNAP4	chr16	76272401	76565757