JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNTNAP4_chr16_76272401_76565757	0/1	t0003	2338	37	0	13	16	1	6	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	t0004	2337	36	11	1	24	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	1/0	t0005	2337	15	9	0	5	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	t0006	2337	14	13	1	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	t0007	2337	4	4	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	t0008	2337	4	4	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	t0009	2337	3	0	0	3	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	t0010	2337	3	3	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	t0011	2337	3	3	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	t0012	2338	2	0	0	2	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	t0013	2337	2	2	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	t0014	2337	2	2	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	t0015	2337	2	2	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	t0016	2337	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	t0017	2337	1	0	0	1	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	t0018	2337	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	t0019	2337	1	0	0	0	1	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	t0020	2337	1	0	1	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	t0021	2337	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	t0022	2337	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	t0023	2337	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	t0024	2337	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	t0025	2337	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	t0026	2337	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	t0027	2337	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	t0028	2337	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	t0029	2337	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	t0030	2337	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP5_chr2_124020287_124926219	0/1	t0001	7296	22	15	2	2	0	2	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	1/0	t0002	7296	14	6	3	2	0	2	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	t0003	7296	4	4	0	0	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	t0004	7291	4	4	0	0	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	t0005	7291	2	2	0	0	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	t0006	7296	2	2	0	0	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	t0007	7294	2	2	0	0	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	t0008	7291	2	2	0	0	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	t0009	7296	1	1	0	0	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	t0010	7296	1	1	0	0	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	t0011	7296	1	1	0	0	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	t0012	7296	1	1	0	0	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	t0013	7296	1	1	0	0	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	t0014	7296	1	0	1	0	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	t0015	7296	1	0	1	0	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	t0016	7291	1	1	0	0	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	t0017	7292	1	1	0	0	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	t0018	7291	1	1	0	0	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	t0019	7291	1	1	0	0	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	t0020	7296	1	0	1	0	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTRL_chr9_121069955_121182610	1/1	t0001	742	300	69	59	137	12	21	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	t0002	743	21	8	4	5	2	2	copy fasta	CNTRL	chr9	121069955	121182610