JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNTRL_chr9_121069955_121182610	0/0	t0003	740	8	7	1	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	t0004	742	1	0	0	0	0	1	copy fasta	CNTRL	chr9	121069955	121182610
CNTROB_chr17_7927206_7954920	0/1	t0001	1279	200	37	33	101	11	17	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	t0002	1279	69	23	3	40	0	3	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	t0003	1279	63	12	25	15	6	5	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	t0004	1279	44	18	2	18	0	6	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	t0005	1279	10	0	5	0	0	5	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	t0006	1276	8	6	1	1	0	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	t0007	1279	2	0	1	0	1	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	t0008	1279	1	0	0	0	0	1	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	t0009	1279	1	1	0	0	0	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	t0010	1279	1	0	0	0	0	1	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	t0011	1279	1	0	0	1	0	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	t0012	1279	1	1	0	0	0	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	1/0	t0013	1285	1	0	0	0	0	0	copy fasta	CNTROB	chr17	7927206	7954920
COA1_chr7_43634257_43734523	0/1	t0001	459	296	78	68	114	13	22	copy fasta	COA1	chr7	43634257	43734523
COA1_chr7_43634257_43734523	1/0	t0002	459	84	4	12	52	5	10	copy fasta	COA1	chr7	43634257	43734523
COA1_chr7_43634257_43734523	0/0	t0003	459	1	1	0	0	0	0	copy fasta	COA1	chr7	43634257	43734523
COA1_chr7_43634257_43734523	0/0	t0004	459	1	1	0	0	0	0	copy fasta	COA1	chr7	43634257	43734523
COA1_chr7_43634257_43734523	0/0	t0005	459	1	0	0	1	0	0	copy fasta	COA1	chr7	43634257	43734523
COA1_chr7_43634257_43734523	0/0	t0006	459	1	0	0	1	0	0	copy fasta	COA1	chr7	43634257	43734523
COA3_chr17_42792625_42803704	1/1	t0001	460	292	72	51	126	8	33	copy fasta	COA3	chr17	42792625	42803704
COA3_chr17_42792625_42803704	0/0	t0002	460	7	7	0	0	0	0	copy fasta	COA3	chr17	42792625	42803704
COA3_chr17_42792625_42803704	0/0	t0003	460	5	0	0	5	0	0	copy fasta	COA3	chr17	42792625	42803704
COA3_chr17_42792625_42803704	0/0	t0004	460	3	3	0	0	0	0	copy fasta	COA3	chr17	42792625	42803704
COA3_chr17_42792625_42803704	0/0	t0005	460	1	0	1	0	0	0	copy fasta	COA3	chr17	42792625	42803704
COA3_chr17_42792625_42803704	0/0	t0006	460	1	0	0	0	0	1	copy fasta	COA3	chr17	42792625	42803704
COA3_chr17_42792625_42803704	0/0	t0007	460	1	0	0	1	0	0	copy fasta	COA3	chr17	42792625	42803704
COA4_chr11_73867667_73881846	1/1	t0001	555	385	91	71	165	12	44	copy fasta	COA4	chr11	73867667	73881846
COA4_chr11_73867667_73881846	0/0	t0002	555	3	0	3	0	0	0	copy fasta	COA4	chr11	73867667	73881846
COA4_chr11_73867667_73881846	0/0	t0003	555	2	2	0	0	0	0	copy fasta	COA4	chr11	73867667	73881846
COA4_chr11_73867667_73881846	0/0	t0004	555	1	1	0	0	0	0	copy fasta	COA4	chr11	73867667	73881846
COA4_chr11_73867667_73881846	0/0	t0005	555	1	0	1	0	0	0	copy fasta	COA4	chr11	73867667	73881846
COA4_chr11_73867667_73881846	0/0	t0006	555	1	0	1	0	0	0	copy fasta	COA4	chr11	73867667	73881846
COA4_chr11_73867667_73881846	0/0	t0007	555	1	0	0	1	0	0	copy fasta	COA4	chr11	73867667	73881846
COA5_chr2_98594314_98613512	1/0	t0001	1546	282	58	52	128	12	31	copy fasta	COA5	chr2	98594314	98613512
COA5_chr2_98594314_98613512	0/1	t0002	1546	102	7	25	54	4	11	copy fasta	COA5	chr2	98594314	98613512
COA5_chr2_98594314_98613512	0/0	t0003	1546	11	3	0	8	0	0	copy fasta	COA5	chr2	98594314	98613512
COA5_chr2_98594314_98613512	0/0	t0004	1546	6	4	2	0	0	0	copy fasta	COA5	chr2	98594314	98613512
COA5_chr2_98594314_98613512	0/0	t0005	1546	3	3	0	0	0	0	copy fasta	COA5	chr2	98594314	98613512
COA5_chr2_98594314_98613512	0/0	t0006	1546	3	3	0	0	0	0	copy fasta	COA5	chr2	98594314	98613512
COA5_chr2_98594314_98613512	0/0	t0007	1546	2	2	0	0	0	0	copy fasta	COA5	chr2	98594314	98613512
COA5_chr2_98594314_98613512	0/0	t0008	1546	2	0	0	2	0	0	copy fasta	COA5	chr2	98594314	98613512
COA5_chr2_98594314_98613512	0/0	t0009	1546	1	1	0	0	0	0	copy fasta	COA5	chr2	98594314	98613512
COA5_chr2_98594314_98613512	0/0	t0010	1546	1	1	0	0	0	0	copy fasta	COA5	chr2	98594314	98613512
COA5_chr2_98594314_98613512	0/0	t0011	1546	1	0	0	1	0	0	copy fasta	COA5	chr2	98594314	98613512
COA5_chr2_98594314_98613512	0/0	t0012	1546	1	1	0	0	0	0	copy fasta	COA5	chr2	98594314	98613512
COA5_chr2_98594314_98613512	0/0	t0013	1546	1	0	0	1	0	0	copy fasta	COA5	chr2	98594314	98613512
COA5_chr2_98594314_98613512	0/0	t0014	1546	1	0	1	0	0	0	copy fasta	COA5	chr2	98594314	98613512
COA5_chr2_98594314_98613512	0/0	t0015	1546	1	1	0	0	0	0	copy fasta	COA5	chr2	98594314	98613512