JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COA5_chr2_98594314_98613512	0/0	t0016	1546	1	1	0	0	0	0	copy fasta	COA5	chr2	98594314	98613512
COA5_chr2_98594314_98613512	0/0	t0017	1546	1	1	0	0	0	0	copy fasta	COA5	chr2	98594314	98613512
COA6_chr1_234368456_234390080	1/1	t0001	1274	273	82	46	105	8	30	copy fasta	COA6	chr1	234368456	234390080
COA6_chr1_234368456_234390080	0/0	t0002	1277	122	6	26	75	6	9	copy fasta	COA6	chr1	234368456	234390080
COA6_chr1_234368456_234390080	0/0	t0003	1274	2	2	0	0	0	0	copy fasta	COA6	chr1	234368456	234390080
COA6_chr1_234368456_234390080	0/0	t0004	1274	2	1	1	0	0	0	copy fasta	COA6	chr1	234368456	234390080
COA6_chr1_234368456_234390080	0/0	t0005	1274	1	0	1	0	0	0	copy fasta	COA6	chr1	234368456	234390080
COA6_chr1_234368456_234390080	0/0	t0006	1274	1	0	0	1	0	0	copy fasta	COA6	chr1	234368456	234390080
COA6_chr1_234368456_234390080	0/0	t0007	1274	1	1	0	0	0	0	copy fasta	COA6	chr1	234368456	234390080
COA6_chr1_234368456_234390080	0/0	t0008	1274	1	0	0	0	0	1	copy fasta	COA6	chr1	234368456	234390080
COA6_chr1_234368456_234390080	0/0	t0009	1274	1	1	0	0	0	0	copy fasta	COA6	chr1	234368456	234390080
COA6_chr1_234368456_234390080	0/0	t0010	1277	1	0	0	1	0	0	copy fasta	COA6	chr1	234368456	234390080
COA6_chr1_234368456_234390080	0/0	t0011	1274	1	1	0	0	0	0	copy fasta	COA6	chr1	234368456	234390080
COA7_chr1_52679449_52703347	0/0	t0001	3293	207	10	35	129	9	24	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0002	3294	43	9	12	2	6	14	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0003	3293	33	1	2	29	1	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0004	3293	20	18	2	0	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0005	3293	10	10	0	0	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0006	3293	9	8	1	0	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0007	3288	7	3	4	0	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0008	3293	7	7	0	0	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0009	3293	6	6	0	0	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0010	3293	6	0	0	6	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0011	3295	5	0	0	5	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0012	3294	3	3	0	0	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0013	3293	3	2	1	0	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0014	3293	2	0	0	2	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0015	3294	2	0	0	1	0	1	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0016	3293	2	0	0	2	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0017	3293	2	0	0	2	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0018	3293	2	2	0	0	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0019	3294	2	2	0	0	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0020	3288	2	1	1	0	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0021	3293	2	2	0	0	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0022	3293	2	0	0	0	0	2	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0023	3293	2	2	0	0	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0024	3293	2	2	0	0	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0025	3293	2	0	2	0	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0026	3293	2	2	0	0	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0027	3292	2	2	0	0	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0028	3294	2	0	1	0	0	1	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0029	3295	1	0	0	1	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0030	3294	1	0	0	1	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0031	3293	1	0	0	0	0	1	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0032	3293	1	1	0	0	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0033	3293	1	0	0	0	0	1	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0034	3293	1	0	0	1	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0035	3295	1	0	0	1	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0036	3293	1	0	0	0	1	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0037	3292	1	0	0	1	0	0	copy fasta	COA7	chr1	52679449	52703347