JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COA7_chr1_52679449_52703347	0/0	t0038	3293	1	0	0	1	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0039	3293	1	0	0	1	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0040	3292	1	0	0	1	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0041	3294	1	0	0	0	0	1	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0042	3288	1	1	0	0	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0043	3294	1	0	0	1	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0044	3295	1	1	0	0	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0045	3293	1	1	0	0	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0046	3292	1	1	0	0	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0047	3292	1	1	0	0	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0048	3292	1	0	0	1	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0049	3294	1	0	0	0	0	1	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0050	3294	1	0	0	0	0	1	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0051	3294	1	0	0	0	1	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0052	3294	1	0	0	0	0	1	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0053	3293	1	0	1	0	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0054	3294	1	0	1	0	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	t0055	3293	1	0	1	0	0	0	copy fasta	COA7	chr1	52679449	52703347
COA8_chr14_103557960_103595896	1/1	t0001	653	364	73	68	161	18	42	copy fasta	COA8	chr14	103557960	103595896
COA8_chr14_103557960_103595896	0/0	t0002	653	9	9	0	0	0	0	copy fasta	COA8	chr14	103557960	103595896
COA8_chr14_103557960_103595896	0/0	t0003	653	4	2	2	0	0	0	copy fasta	COA8	chr14	103557960	103595896
COA8_chr14_103557960_103595896	0/0	t0004	653	3	3	0	0	0	0	copy fasta	COA8	chr14	103557960	103595896
COA8_chr14_103557960_103595896	0/0	t0005	653	1	1	0	0	0	0	copy fasta	COA8	chr14	103557960	103595896
COA8_chr14_103557960_103595896	0/0	t0006	653	1	0	0	1	0	0	copy fasta	COA8	chr14	103557960	103595896
COASY_chr17_42557148_42571277	1/1	t0001	785	374	81	69	158	16	48	copy fasta	COASY	chr17	42557148	42571277
COASY_chr17_42557148_42571277	0/0	t0002	785	6	5	1	0	0	0	copy fasta	COASY	chr17	42557148	42571277
COASY_chr17_42557148_42571277	0/0	t0003	785	6	0	0	6	0	0	copy fasta	COASY	chr17	42557148	42571277
COASY_chr17_42557148_42571277	0/0	t0004	785	2	0	0	2	0	0	copy fasta	COASY	chr17	42557148	42571277
COASY_chr17_42557148_42571277	0/0	t0005	785	1	1	0	0	0	0	copy fasta	COASY	chr17	42557148	42571277
COASY_chr17_42557148_42571277	0/0	t0006	785	1	1	0	0	0	0	copy fasta	COASY	chr17	42557148	42571277
COASY_chr17_42557148_42571277	0/0	t0007	785	1	0	0	1	0	0	copy fasta	COASY	chr17	42557148	42571277
COASY_chr17_42557148_42571277	0/0	t0008	785	1	0	0	1	0	0	copy fasta	COASY	chr17	42557148	42571277
COASY_chr17_42557148_42571277	0/0	t0009	785	1	1	0	0	0	0	copy fasta	COASY	chr17	42557148	42571277
COASY_chr17_42557148_42571277	0/0	t0010	785	1	1	0	0	0	0	copy fasta	COASY	chr17	42557148	42571277
COBLL1_chr2_164675188_164846823	1/0	t0001	5923	76	14	18	24	8	11	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0002	5925	13	12	0	0	1	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0003	5927	13	8	2	0	2	1	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0004	5925	7	7	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0005	5925	7	2	0	5	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0006	5925	6	0	2	1	1	2	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0007	5925	5	1	3	1	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0008	5925	5	2	3	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0009	5929	4	4	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0010	5925	4	3	1	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0011	5923	4	4	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0012	5923	3	0	0	3	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0013	5925	3	3	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0014	5923	3	2	1	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0015	5923	2	2	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0016	5917	2	0	0	1	0	1	copy fasta	COBLL1	chr2	164675188	164846823