JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COBLL1_chr2_164675188_164846823	0/0	t0017	5927	2	2	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0018	5925	2	2	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0019	5921	2	0	1	0	0	1	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0020	5927	2	0	0	2	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0021	5923	2	2	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0022	5925	2	1	1	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0023	5929	2	0	2	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/1	t0024	5929	2	0	0	0	0	1	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0025	5913	2	2	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0026	5923	1	0	0	1	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0027	5925	1	1	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0028	5925	1	1	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0029	5931	1	1	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0030	5927	1	0	0	0	0	1	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0031	5917	1	0	0	1	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0032	5927	1	1	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0033	5916	1	1	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0034	5920	1	0	1	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0035	5923	1	0	1	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0036	5923	1	0	1	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0037	5923	1	0	1	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0038	5919	1	1	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0039	5923	1	0	1	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0040	5923	1	0	0	1	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0041	5923	1	0	0	1	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0042	5923	1	0	0	0	0	1	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0043	5923	1	1	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0044	5923	1	0	1	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0045	5925	1	0	0	0	0	1	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0046	5927	1	1	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0047	5923	1	0	0	0	0	1	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0048	5925	1	1	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0049	5925	1	1	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0050	5927	1	0	1	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0051	5927	1	1	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0052	5923	1	0	1	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0053	5927	1	0	1	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0054	5931	1	0	1	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0055	5923	1	0	0	1	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0056	5925	1	0	0	0	0	1	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0057	5921	1	1	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0058	5925	1	0	1	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0059	5919	1	1	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0060	5921	1	1	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0061	5921	1	0	1	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	t0062	5923	1	1	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBL_chr7_51011212_51321809	0/1	t0001	1517	115	38	24	37	6	9	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	1/0	t0002	1516	44	4	8	25	0	6	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	t0003	1517	36	3	5	24	0	4	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	t0004	1518	9	8	1	0	0	0	copy fasta	COBL	chr7	51011212	51321809