JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COBL_chr7_51011212_51321809	0/0	t0005	1517	7	7	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	t0006	1517	4	4	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	t0007	1517	3	3	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	t0008	1517	3	3	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	t0009	1517	2	2	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	t0010	1517	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	t0011	1517	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	t0012	1517	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	t0013	1517	1	0	0	0	0	1	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	t0014	1517	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	t0015	1517	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	t0016	1517	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COCH_chr14_30869559_30895618	1/1	t0001	884	404	75	54	230	8	35	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	t0002	884	54	7	25	7	8	7	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	t0003	881	9	8	1	0	0	0	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	t0004	879	5	4	1	0	0	0	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	t0005	884	1	0	1	0	0	0	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	t0006	871	1	0	0	1	0	0	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	t0007	884	1	0	0	0	0	1	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	t0008	881	1	1	0	0	0	0	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	t0009	881	1	1	0	0	0	0	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	t0010	884	1	0	0	0	0	1	copy fasta	COCH	chr14	30869559	30895618
COG1_chr17_73188055_73213507	1/1	t0001	72	428	100	80	188	10	48	copy fasta	COG1	chr17	73188055	73213507
COG2_chr1_230637481_230698982	1/0	t0001	716	197	54	40	67	14	21	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	t0002	715	74	13	8	38	3	12	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/1	t0003	715	62	6	15	37	0	3	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	t0004	714	60	14	5	36	1	4	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	t0005	713	7	0	0	7	0	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	t0006	716	3	3	0	0	0	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	t0007	715	2	2	0	0	0	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	t0008	716	1	0	0	1	0	0	copy fasta	COG2	chr1	230637481	230698982
COG3_chr13_45459939_45541701	1/1	t0001	2069	239	40	49	115	6	27	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	t0002	2069	71	27	11	24	2	7	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	t0003	2067	12	8	2	2	0	0	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	t0004	2069	8	8	0	0	0	0	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	t0005	2069	2	0	2	0	0	0	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	t0006	2069	1	0	0	1	0	0	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	t0007	2069	1	0	1	0	0	0	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	t0008	2069	1	0	0	1	0	0	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	t0009	2069	1	1	0	0	0	0	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	t0010	2069	1	0	0	1	0	0	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	t0011	2069	1	1	0	0	0	0	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	t0012	2069	1	1	0	0	0	0	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	t0013	2067	1	0	1	0	0	0	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	t0014	2069	1	1	0	0	0	0	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	t0015	2069	1	1	0	0	0	0	copy fasta	COG3	chr13	45459939	45541701
COG4_chr16_70475571_70528554	1/0	t0001	451	192	44	48	61	10	28	copy fasta	COG4	chr16	70475571	70528554
COG4_chr16_70475571_70528554	0/1	t0002	451	141	23	22	77	6	12	copy fasta	COG4	chr16	70475571	70528554
COG4_chr16_70475571_70528554	0/0	t0003	451	12	0	0	12	0	0	copy fasta	COG4	chr16	70475571	70528554
COG4_chr16_70475571_70528554	0/0	t0004	451	8	8	0	0	0	0	copy fasta	COG4	chr16	70475571	70528554