JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COG4_chr16_70475571_70528554	0/0	t0005	451	1	1	0	0	0	0	copy fasta	COG4	chr16	70475571	70528554
COG6_chr13_39650662_39757628	0/1	t0001	1601	109	14	19	52	4	19	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	t0002	1601	107	19	21	48	7	12	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	1/0	t0003	1601	93	22	20	42	3	5	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	t0004	1600	22	12	0	7	3	0	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	t0005	1600	11	11	0	0	0	0	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	t0006	1602	8	2	2	4	0	0	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	t0007	1602	5	2	0	2	0	1	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	t0008	1601	4	3	1	0	0	0	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	t0009	1601	3	0	0	3	0	0	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	t0010	1601	2	2	0	0	0	0	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	t0011	1602	2	2	0	0	0	0	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	t0012	1601	1	0	1	0	0	0	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	t0013	1601	1	0	0	0	0	1	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	t0014	1601	1	1	0	0	0	0	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	t0015	1601	1	0	0	0	1	0	copy fasta	COG6	chr13	39650662	39757628
COG7_chr16_23383493_23458189	1/1	t0001	623	118	21	28	45	4	18	copy fasta	COG7	chr16	23383493	23458189
COG7_chr16_23383493_23458189	0/0	t0002	622	91	28	10	38	5	10	copy fasta	COG7	chr16	23383493	23458189
COG7_chr16_23383493_23458189	0/0	t0003	622	43	21	13	4	0	5	copy fasta	COG7	chr16	23383493	23458189
COG7_chr16_23383493_23458189	0/0	t0004	624	9	1	0	5	1	2	copy fasta	COG7	chr16	23383493	23458189
COG7_chr16_23383493_23458189	0/0	t0005	623	4	2	0	2	0	0	copy fasta	COG7	chr16	23383493	23458189
COG7_chr16_23383493_23458189	0/0	t0006	623	3	3	0	0	0	0	copy fasta	COG7	chr16	23383493	23458189
COG7_chr16_23383493_23458189	0/0	t0007	623	3	2	1	0	0	0	copy fasta	COG7	chr16	23383493	23458189
COG7_chr16_23383493_23458189	0/0	t0008	622	1	0	0	0	0	1	copy fasta	COG7	chr16	23383493	23458189
COG8_chr16_69321428_69344564	1/0	t0001	2791	196	38	47	81	9	20	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0002	2792	38	5	5	23	1	4	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0003	2792	18	4	6	5	1	2	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/1	t0004	2793	15	5	0	2	2	5	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0005	2787	11	0	0	4	0	7	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0006	2794	10	10	0	0	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0007	2798	7	1	2	3	0	1	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0008	2787	6	0	5	0	1	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0009	2795	5	4	1	0	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0010	2795	5	5	0	0	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0011	2790	5	1	1	2	1	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0012	2792	5	0	1	2	2	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0013	2796	4	4	0	0	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0014	2791	3	3	0	0	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0015	2799	3	0	0	3	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0016	2791	3	2	1	0	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0017	2795	3	3	0	0	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0018	2793	2	2	0	0	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0019	2797	2	0	0	1	1	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0020	2793	2	0	0	1	0	1	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0021	2791	2	0	2	0	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0022	2791	1	0	0	1	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0023	2792	1	1	0	0	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0024	2791	1	1	0	0	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0025	2784	1	1	0	0	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0026	2791	1	0	0	1	0	0	copy fasta	COG8	chr16	69321428	69344564