JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COG8_chr16_69321428_69344564	0/0	t0027	2792	1	0	0	1	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0028	2791	1	1	0	0	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0029	2793	1	0	0	0	0	1	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0030	2791	1	0	0	1	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0031	2791	1	1	0	0	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0032	2781	1	1	0	0	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0033	2791	1	0	0	1	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0034	2791	1	0	0	0	0	1	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0035	2790	1	0	1	0	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	t0036	2791	1	1	0	0	0	0	copy fasta	COG8	chr16	69321428	69344564
COIL_chr17_56933199_56966050	1/1	t0001	904	361	55	78	167	11	48	copy fasta	COIL	chr17	56933199	56966050
COIL_chr17_56933199_56966050	0/0	t0002	904	31	30	1	0	0	0	copy fasta	COIL	chr17	56933199	56966050
COIL_chr17_56933199_56966050	0/0	t0003	903	6	6	0	0	0	0	copy fasta	COIL	chr17	56933199	56966050
COIL_chr17_56933199_56966050	0/0	t0004	904	5	4	1	0	0	0	copy fasta	COIL	chr17	56933199	56966050
COIL_chr17_56933199_56966050	0/0	t0005	899	5	0	0	5	0	0	copy fasta	COIL	chr17	56933199	56966050
COIL_chr17_56933199_56966050	0/0	t0006	903	4	1	1	1	1	0	copy fasta	COIL	chr17	56933199	56966050
COIL_chr17_56933199_56966050	0/0	t0007	904	2	1	1	0	0	0	copy fasta	COIL	chr17	56933199	56966050
COIL_chr17_56933199_56966050	0/0	t0008	904	2	0	0	2	0	0	copy fasta	COIL	chr17	56933199	56966050
COIL_chr17_56933199_56966050	0/0	t0009	904	1	1	0	0	0	0	copy fasta	COIL	chr17	56933199	56966050
COIL_chr17_56933199_56966050	0/0	t0010	904	1	0	0	1	0	0	copy fasta	COIL	chr17	56933199	56966050
COL10A1_chr6_116113909_116131132	0/0	t0001	1263	365	74	65	171	12	43	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	t0002	1263	9	9	0	0	0	0	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	1/0	t0003	1260	8	1	4	0	2	0	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	t0004	1263	6	5	1	0	0	0	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	t0005	1263	6	0	0	6	0	0	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	t0006	1264	5	1	0	4	0	0	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/1	t0007	1264	4	0	2	0	0	1	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	t0008	1263	4	0	0	0	0	4	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	t0009	1263	4	0	0	4	0	0	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	t0010	1264	3	3	0	0	0	0	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	t0011	1262	3	0	0	3	0	0	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	t0012	1263	2	2	0	0	0	0	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	t0013	1263	1	1	0	0	0	0	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	t0014	1263	1	0	0	1	0	0	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	t0015	1263	1	0	0	1	0	0	copy fasta	COL10A1	chr6	116113909	116131132
COL11A1_chr1_102871473_103113522	1/1	t0001	1891	79	26	21	17	7	6	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	t0002	1891	34	12	7	6	0	9	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	t0003	1891	23	22	1	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	t0004	1891	19	15	1	0	2	1	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	t0005	1891	13	1	0	11	1	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	t0006	1891	6	6	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	t0007	1891	3	3	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	t0008	1891	2	2	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	t0009	1891	1	0	1	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	t0010	1891	1	1	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	t0011	1891	1	1	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	t0012	1891	1	0	1	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	t0013	1891	1	1	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A2_chr6_33157694_33197467	0/1	t0001	1212	338	76	68	131	17	45	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	t0002	1212	13	0	2	10	1	0	copy fasta	COL11A2	chr6	33157694	33197467