JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COL11A2_chr6_33157694_33197467	0/0	t0003	1212	9	8	1	0	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	t0004	1212	3	3	0	0	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	t0005	1212	1	1	0	0	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	t0006	1212	1	0	0	1	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	t0007	1212	1	0	0	0	0	1	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	t0008	1212	1	0	1	0	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL12A1_chr6_75079326_75211053	0/1	t0001	2538	102	5	18	56	3	19	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	1/0	t0002	2534	21	5	0	11	1	3	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	t0003	2540	20	20	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	t0004	2536	15	0	2	11	0	2	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	t0005	2542	12	9	3	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	t0006	2539	10	10	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	t0007	2539	8	7	1	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	t0008	2537	2	1	1	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	t0009	2537	2	1	1	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	t0010	2540	2	2	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	t0011	2534	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	t0012	2541	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	t0013	2534	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	t0014	2534	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	t0015	2534	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	t0016	2541	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	t0017	2538	1	0	0	1	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	t0018	2538	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	t0019	2538	1	0	0	1	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	t0020	2542	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	t0021	2542	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	t0022	2538	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL13A1_chr10_69796906_69964144	0/1	t0001	962	176	38	41	61	8	27	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	t0002	962	71	5	16	38	4	8	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	1/0	t0003	962	35	15	0	15	0	4	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	t0004	962	17	16	1	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	t0005	962	8	0	0	6	0	2	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	t0006	962	3	0	2	0	0	1	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	t0007	962	2	2	0	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	t0008	962	2	1	1	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	t0009	962	2	2	0	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	t0010	962	2	2	0	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	t0011	962	1	0	1	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	t0012	962	1	1	0	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	t0013	962	1	0	0	1	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	t0014	962	1	1	0	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	t0015	962	1	0	0	1	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	t0016	962	1	1	0	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL14A1_chr8_120120102_120378573	0/1	t0001	2619	109	23	20	46	4	15	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	1/0	t0002	2619	62	29	10	18	1	3	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	t0003	2619	18	1	1	10	1	5	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	t0004	2619	7	6	1	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	t0005	2619	3	2	1	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	t0006	2619	2	2	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573