Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADD2_chr2_70651784_70773200	0/0	t0064	7109	1	0	1	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0065	7108	1	0	0	1	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0066	7109	1	0	0	1	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0067	7110	1	0	0	0	0	1	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0068	7112	1	1	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0069	7110	1	0	1	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0070	7112	1	1	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0071	7106	1	0	0	1	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0072	7108	1	1	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0073	7110	1	0	0	1	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0074	7106	1	0	0	1	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0075	7109	1	0	1	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0076	7107	1	0	0	1	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0077	7110	1	0	0	1	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0078	7109	1	0	0	1	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0079	7109	1	0	0	1	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0080	7107	1	0	0	1	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0081	7108	1	0	0	0	0	1	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0082	7111	1	0	0	0	0	1	copy fasta	ADD2	chr2	70651784	70773200
ADD3_chr10_110002984_110140565	0/0	t0001	2292	150	32	16	84	1	17	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	1/1	t0002	2293	49	0	10	25	1	11	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	t0003	2292	29	25	4	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	t0004	2292	22	0	0	20	0	2	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	t0005	2292	6	5	1	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	t0006	2292	6	6	0	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	t0007	2292	5	5	0	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	t0008	2293	4	4	0	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	t0009	2292	4	4	0	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	t0010	2292	2	2	0	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	t0011	2292	2	2	0	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	t0012	2293	2	0	0	2	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	t0013	2292	1	1	0	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	t0014	2292	1	1	0	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	t0015	2292	1	0	0	1	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	t0016	2292	1	0	0	1	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	t0017	2292	1	0	1	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	t0018	2292	1	1	0	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	t0019	2292	1	0	0	1	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADGB_chr6_146593972_146820462	1/1	t0001	315	136	54	22	35	4	19	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	t0002	315	120	12	22	77	4	5	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	t0003	315	12	10	0	0	2	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	t0004	315	3	0	3	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	t0005	315	1	0	1	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	t0006	315	1	1	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	t0007	315	1	0	1	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	t0008	315	1	1	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	t0009	315	1	0	1	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGRA1_chr10_133082924_133136675	0/0	t0001	2556	69	2	11	43	4	9	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	t0002	2582	42	4	7	24	2	5	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	1/1	t0003	2582	32	1	5	13	3	8	copy fasta	ADGRA1	chr10	133082924	133136675