JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COL14A1_chr8_120120102_120378573	0/0	t0007	2619	2	2	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	t0008	2619	2	1	1	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	t0009	2619	2	2	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	t0010	2619	1	1	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	t0011	2619	1	1	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	t0012	2619	1	1	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	t0013	2619	1	0	0	0	0	1	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	t0014	2619	1	0	0	1	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	t0015	2619	1	0	0	1	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	t0016	2619	1	1	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	t0017	2619	1	1	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	t0018	2619	1	1	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	t0019	2619	1	1	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	t0020	2619	1	1	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL15A1_chr9_98938907_99075787	0/0	t0001	1059	144	23	19	82	1	19	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/1	t0002	1058	125	35	37	32	8	12	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	t0003	1059	17	3	0	9	0	5	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	t0004	1059	5	5	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	t0005	1060	4	3	1	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	t0006	1058	4	4	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	t0007	1058	3	3	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	1/0	t0008	1057	2	1	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	t0009	1058	2	1	1	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	t0010	1058	2	0	0	1	0	1	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	t0011	1059	1	0	0	0	0	1	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	t0012	1057	1	0	0	0	1	0	copy fasta	COL15A1	chr9	98938907	99075787
COL16A1_chr1_31647263_31709017	1/0	t0001	604	200	58	37	76	9	19	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/1	t0002	604	120	25	27	39	5	23	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	t0003	604	6	6	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	t0004	604	5	3	2	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	t0005	604	4	0	0	4	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	t0006	604	2	2	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	t0007	604	2	0	0	0	0	2	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	t0008	604	1	1	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	t0009	604	1	0	0	1	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	t0010	604	1	1	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL17A1_chr10_104026286_104090880	1/1	t0001	1119	219	44	35	111	7	20	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	t0002	1118	74	26	15	27	1	5	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	t0003	1118	23	5	2	7	0	9	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	t0004	1119	9	8	1	0	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	t0005	1119	5	0	0	5	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	t0006	1119	2	2	0	0	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	t0007	1118	1	1	0	0	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	t0008	1118	1	1	0	0	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	t0009	1118	1	1	0	0	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	t0010	1119	1	0	1	0	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL18A1_chr21_45400165_45518720	0/0	t0001	1391	144	44	23	56	3	18	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	1/0	t0002	1389	83	9	22	30	6	15	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/1	t0003	1389	26	9	6	5	3	2	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	t0004	1391	13	10	0	0	0	3	copy fasta	COL18A1	chr21	45400165	45518720