JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COL18A1_chr21_45400165_45518720	0/0	t0005	1391	5	5	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	t0006	1389	5	0	0	5	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	t0007	1389	2	0	0	2	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	t0008	1391	2	1	0	1	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	t0009	1391	2	2	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	t0010	1391	2	2	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	t0011	1391	2	1	1	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	t0012	1391	1	1	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	t0013	1391	1	0	1	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	t0014	1389	1	0	1	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	t0015	1391	1	1	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	t0016	1391	1	1	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	t0017	1389	1	0	0	1	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL19A1_chr6_69861556_70217468	0/0	t0001	5313	40	13	12	9	3	3	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0002	5316	28	2	6	13	1	6	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0003	5312	17	9	0	8	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0004	5310	14	11	1	2	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0005	5313	9	0	0	9	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0006	5314	8	6	2	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	1/0	t0007	5312	7	0	2	2	0	2	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0008	5317	7	1	3	2	0	1	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0009	5312	6	6	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/1	t0010	5312	4	0	1	0	2	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0011	5314	3	2	1	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0012	5316	3	3	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0013	5316	2	2	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0014	5314	2	2	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0015	5315	2	0	0	2	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0016	5313	2	2	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0017	5314	2	0	0	2	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0018	5315	2	2	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0019	5314	1	1	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0020	5312	1	1	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0021	5313	1	0	0	0	0	1	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0022	5313	1	0	0	0	0	1	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0023	5313	1	1	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0024	5315	1	0	0	1	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0025	5316	1	1	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0026	5312	1	1	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0027	5317	1	1	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0028	5309	1	0	0	1	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0029	5310	1	0	0	1	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0030	5310	1	0	1	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0031	5315	1	1	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0032	5311	1	0	1	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0033	5313	1	0	0	1	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0034	5315	1	1	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0035	5312	1	1	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0036	5312	1	0	1	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0037	5312	1	0	0	1	0	0	copy fasta	COL19A1	chr6	69861556	70217468