JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COL19A1_chr6_69861556_70217468	0/0	t0038	5312	1	1	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0039	5312	1	1	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0040	5316	1	0	1	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0041	5317	1	0	0	1	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	t0042	5313	1	0	0	1	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL1A1_chr17_50179101_50206631	0/1	t0001	1526	204	40	37	89	9	28	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0002	1522	92	6	10	69	0	7	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0003	1520	24	13	4	3	1	3	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0004	1526	15	0	2	10	0	3	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0005	1522	10	6	4	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0006	1527	9	2	2	5	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0007	1519	8	0	7	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0008	1522	8	0	0	8	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0009	1527	7	0	1	5	0	1	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0010	1522	6	4	2	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0011	1525	5	5	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0012	1525	5	1	3	0	1	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0013	1522	4	4	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0014	1521	4	0	1	3	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0015	1528	3	2	1	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0016	1523	3	3	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0017	1527	3	0	0	3	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0018	1521	2	1	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0019	1528	2	0	0	0	0	2	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0020	1525	2	0	2	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0021	1522	2	2	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0022	1522	2	0	0	0	1	1	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0023	1521	2	1	1	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0024	1522	1	0	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0025	1521	1	0	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0026	1527	1	0	1	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0027	1523	1	0	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0028	1523	1	0	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0029	1520	1	0	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0030	1522	1	1	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0031	1522	1	0	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0032	1520	1	1	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0033	1512	1	0	0	0	0	1	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0034	1521	1	0	1	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0035	1526	1	1	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0036	1522	1	0	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0037	1523	1	1	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0038	1526	1	0	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0039	1523	1	1	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0040	1526	1	1	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0041	1526	1	0	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0042	1526	1	0	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0043	1526	1	0	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0044	1520	1	1	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0045	1523	1	0	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631