JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COL1A1_chr17_50179101_50206631	0/0	t0046	1524	1	0	1	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0047	1525	1	1	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	1/0	t0048	1520	1	0	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	t0049	1518	1	0	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A2_chr7_94389895_94436227	0/0	t0001	979	243	64	24	134	3	18	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	t0002	979	93	5	22	36	5	25	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	1/1	t0003	972	64	9	21	20	5	7	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	t0004	979	29	7	5	16	1	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	t0005	979	6	6	0	0	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	t0006	979	2	2	0	0	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	t0007	979	1	1	0	0	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL20A1_chr20_63288186_63339806	0/0	t0001	4189	103	18	29	36	4	16	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/1	t0002	4189	53	9	6	36	0	1	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	1/0	t0003	4191	22	19	2	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0004	4191	10	10	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0005	4189	9	0	5	2	0	2	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0006	4191	9	0	3	2	1	3	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0007	4189	7	1	4	0	1	1	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0008	4189	7	0	3	0	1	3	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0009	4189	5	3	1	0	0	1	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0010	4189	5	0	4	0	1	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0011	4189	5	5	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0012	4189	4	0	2	2	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0013	4191	3	3	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0014	4189	3	2	1	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0015	4185	3	3	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0016	4189	2	0	0	0	0	2	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0017	4191	2	2	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0018	4189	2	1	1	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0019	4189	2	1	0	0	0	1	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0020	4189	2	0	0	0	0	2	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0021	4189	2	1	0	1	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0022	4189	2	0	2	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0023	4187	2	0	0	2	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0024	4189	2	0	0	2	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0025	4191	2	2	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0026	4189	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0027	4189	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0028	4189	1	0	1	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0029	4189	1	0	1	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0030	4189	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0031	4189	1	0	0	0	0	1	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0032	4191	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0033	4191	1	0	0	0	0	1	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0034	4189	1	0	0	1	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0035	4189	1	0	0	1	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0036	4189	1	0	0	1	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0037	4189	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0038	4189	1	0	0	1	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0039	4189	1	0	0	1	0	0	copy fasta	COL20A1	chr20	63288186	63339806