JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COL20A1_chr20_63288186_63339806	0/0	t0040	4191	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0041	4189	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0042	4173	1	0	0	1	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0043	4189	1	0	0	1	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0044	4191	1	0	1	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0045	4189	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0046	4191	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	t0047	4191	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL21A1_chr6_56051590_56252580	0/0	t0001	1300	88	10	16	45	2	15	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	1/0	t0002	1300	52	3	18	18	3	9	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/1	t0003	1300	27	13	4	5	0	4	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	t0004	1300	24	10	6	3	1	4	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	t0005	1300	15	0	1	12	0	2	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	t0006	1300	12	5	4	2	0	1	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	t0007	1300	11	0	5	4	1	1	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	t0008	1300	7	4	2	0	1	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	t0009	1300	5	0	1	3	0	1	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	t0010	1300	4	3	0	0	0	1	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	t0011	1300	3	1	2	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	t0012	1300	2	2	0	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	t0013	1300	2	2	0	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	t0014	1300	2	1	0	1	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	t0015	1300	2	2	0	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	t0016	1300	2	0	0	0	2	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	t0017	1300	1	1	0	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	t0018	1300	1	0	0	1	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	t0019	1300	1	0	1	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	t0020	1300	1	1	0	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	t0021	1300	1	1	0	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	t0022	1300	1	1	0	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL22A1_chr8_138583235_138919041	1/1	t0001	1514	74	24	23	9	2	14	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	t0002	1514	26	25	1	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	t0003	1514	13	3	5	0	2	3	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	t0004	1514	11	11	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	t0005	1514	10	5	1	1	0	3	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	t0006	1514	6	0	0	5	0	1	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	t0007	1514	5	5	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	t0008	1514	4	4	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	t0009	1514	2	1	1	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	t0010	1514	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	t0011	1514	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	t0012	1514	1	0	0	0	0	1	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	t0013	1514	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	t0014	1514	1	0	1	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	t0015	1514	1	0	0	1	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	t0016	1514	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL23A1_chr5_178232618_178595393	0/0	t0001	1277	59	7	19	16	3	14	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	t0002	1277	45	13	6	20	1	5	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	t0003	1277	44	34	4	2	0	4	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	t0004	1277	43	1	5	28	1	8	copy fasta	COL23A1	chr5	178232618	178595393