JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COL23A1_chr5_178232618_178595393	0/0	t0005	1277	27	17	5	4	1	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	t0006	1277	6	6	0	0	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	t0007	1277	2	2	0	0	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	t0008	1277	2	2	0	0	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	t0009	1277	2	2	0	0	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	t0010	1277	2	2	0	0	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	t0011	1277	1	0	1	0	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	t0012	1277	1	0	0	0	0	1	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	t0013	1277	1	1	0	0	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	t0014	1277	1	1	0	0	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL24A1_chr1_85724233_86161772	0/0	t0001	1689	80	4	20	47	5	4	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/1	t0002	1690	72	14	16	28	4	9	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	1/0	t0003	1690	38	27	2	6	1	1	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	t0004	1690	19	17	2	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	t0005	1690	7	0	1	5	0	1	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	t0006	1689	4	1	0	3	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	t0007	1690	3	3	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	t0008	1689	3	3	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	t0009	1690	2	2	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	t0010	1690	2	0	0	2	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	t0011	1689	2	2	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	t0012	1690	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	t0013	1690	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	t0014	1690	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	t0015	1689	1	0	0	1	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	t0016	1689	1	0	1	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	t0017	1690	1	0	0	0	0	1	copy fasta	COL24A1	chr1	85724233	86161772
COL25A1_chr4_108803725_109307658	0/0	t0001	5749	35	22	8	2	1	2	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	t0002	5745	28	15	3	6	1	3	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	t0003	5745	13	2	5	4	0	2	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	t0004	5749	11	1	3	5	0	2	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	t0005	5749	6	6	0	0	0	0	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	t0006	5750	5	5	0	0	0	0	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	t0007	5749	3	1	0	2	0	0	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	t0008	5749	3	1	2	0	0	0	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	t0009	5749	2	0	0	2	0	0	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	t0010	5749	2	0	1	0	1	0	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	t0011	5749	2	2	0	0	0	0	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	t0012	5747	2	0	1	0	0	1	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	t0013	5747	2	2	0	0	0	0	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	t0014	5749	1	1	0	0	0	0	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	t0015	5749	1	0	1	0	0	0	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	t0016	5749	1	0	1	0	0	0	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	t0017	5745	1	0	0	1	0	0	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	t0018	5745	1	1	0	0	0	0	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	t0019	5745	1	0	0	0	0	1	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	t0020	5745	1	0	1	0	0	0	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	t0021	5749	1	1	0	0	0	0	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	t0022	5765	1	1	0	0	0	0	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	t0023	5749	1	0	0	0	1	0	copy fasta	COL25A1	chr4	108803725	109307658