JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COL3A1_chr2_188969373_189017746	0/0	t0003	1090	16	16	0	0	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	t0004	1088	4	4	0	0	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	t0005	1090	2	0	0	0	0	2	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	t0006	1090	2	2	0	0	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	t0007	1090	1	0	0	0	1	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	t0008	1090	1	1	0	0	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	t0009	1090	1	1	0	0	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	t0010	1090	1	1	0	0	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	t0011	1090	1	0	0	1	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	t0012	1090	1	0	0	1	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL4A1_chr13_110143963_110312157	1/0	t0001	1531	228	64	38	91	7	27	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	t0002	1531	63	3	16	33	3	8	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	t0003	1531	29	21	5	0	3	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	t0004	1531	7	1	4	0	1	1	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	t0005	1531	6	0	1	5	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	t0006	1531	2	0	1	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	t0007	1531	1	1	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	t0008	1531	1	1	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	t0009	1531	1	1	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	t0010	1531	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	t0011	1531	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	t0012	1531	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	t0013	1531	1	0	1	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	t0014	1531	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/1	t0015	1531	1	0	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A2_chr13_110302284_110518209	0/0	t0001	1308	72	11	8	45	1	7	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/1	t0002	1308	60	7	12	32	3	5	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0003	1308	51	3	4	33	0	11	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0004	1306	36	5	12	12	1	6	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0005	1306	30	4	8	7	5	6	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0006	1306	27	6	9	6	2	4	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0007	1306	11	4	2	4	1	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0008	1306	11	6	4	0	1	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0009	1308	7	4	0	1	1	1	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	1/0	t0010	1308	6	5	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0011	1306	4	2	2	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0012	1306	4	0	1	3	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0013	1306	3	0	3	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0014	1308	3	3	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0015	1306	3	3	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0016	1306	2	2	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0017	1308	2	0	0	2	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0018	1306	2	2	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0019	1305	2	2	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0020	1308	2	1	0	0	0	1	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0021	1308	2	0	2	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0022	1306	2	2	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0023	1308	2	0	0	0	0	2	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0024	1308	2	2	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0025	1305	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209