JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COL4A2_chr13_110302284_110518209	0/0	t0026	1306	1	0	1	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0027	1306	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0028	1306	1	0	0	1	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0029	1308	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0030	1308	1	0	1	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0031	1308	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0032	1305	1	0	1	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0033	1306	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0034	1308	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0035	1306	1	0	1	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0036	1308	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0037	1308	1	0	0	0	1	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0038	1306	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0039	1306	1	0	0	1	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0040	1306	1	0	0	1	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0041	1306	1	0	1	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0042	1308	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0043	1308	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0044	1306	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0045	1306	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0046	1306	1	0	0	1	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0047	1306	1	0	0	1	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0048	1308	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0049	1308	1	0	0	0	0	1	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	t0050	1306	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A3_chr2_227159624_227319792	0/1	t0001	3025	117	17	18	63	2	16	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	t0002	3026	60	6	10	30	2	12	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	t0003	3025	46	8	8	23	4	3	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	t0004	3026	26	3	7	13	0	3	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	t0005	3026	20	2	1	15	0	2	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	t0006	3026	16	16	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	t0007	3026	10	1	6	0	2	1	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	t0008	3023	9	9	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	t0009	3026	5	1	1	1	0	2	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	t0010	3026	5	5	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	t0011	3026	4	4	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	t0012	3025	4	4	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	t0013	3026	3	3	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	t0014	3025	3	3	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	t0015	3026	2	2	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	t0016	3026	2	2	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	t0017	3026	2	0	1	1	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	t0018	3023	2	2	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	t0019	3025	2	0	1	1	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	1/0	t0020	3026	1	0	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	t0021	3026	1	0	0	0	0	1	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	t0022	3026	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	t0023	3025	1	0	1	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	t0024	3025	1	0	0	1	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	t0025	3023	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792