JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COL4A4_chr2_226997714_227169205	1/0	t0001	4912	79	11	16	39	5	7	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0002	4911	73	3	18	33	4	15	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/1	t0003	4912	36	3	5	21	1	5	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0004	4912	23	22	1	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0005	4912	21	13	1	4	1	2	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0006	4915	6	6	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0007	4911	4	0	0	4	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0008	4912	3	3	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0009	4911	3	2	0	0	0	1	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0010	4916	2	2	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0011	4914	2	2	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0012	4912	2	0	0	2	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0013	4911	2	2	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0014	4915	2	2	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0015	4915	2	2	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0016	4916	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0017	4912	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0018	4912	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0019	4912	1	0	0	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0020	4914	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0021	4913	1	0	0	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0022	4912	1	0	1	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0023	4912	1	0	0	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0024	4913	1	0	0	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0025	4912	1	0	1	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0026	4913	1	0	1	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0027	4911	1	0	0	0	1	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0028	4912	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0029	4911	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0030	4912	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0031	4912	1	0	0	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0032	4916	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0033	4914	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0034	4914	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0035	4912	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0036	4912	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0037	4911	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0038	4912	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	t0039	4912	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A5_chrX_108434838_108702545	1/1	t0001	1456	254	64	37	120	8	23	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	t0002	1456	2	2	0	0	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	t0003	1456	1	0	0	1	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	t0004	1456	1	1	0	0	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	t0005	1456	1	0	1	0	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	t0006	1456	1	1	0	0	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	t0007	1456	1	1	0	0	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	t0008	1456	1	0	0	0	0	1	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	t0009	1456	1	0	0	0	0	1	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	t0010	1456	1	0	0	0	1	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	t0011	1456	1	0	0	1	0	0	copy fasta	COL4A5	chrX	108434838	108702545