JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COL4A5_chrX_108434838_108702545	0/0	t0012	1456	1	1	0	0	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	t0013	1455	1	0	0	1	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	t0014	1456	1	0	0	1	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	t0015	1453	1	0	0	0	0	1	copy fasta	COL4A5	chrX	108434838	108702545
COL4A6_chrX_108150614_108443422	1/1	t0001	1613	157	22	26	85	3	19	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	t0002	1613	49	17	10	10	6	6	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	t0003	1613	14	14	0	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	t0004	1613	6	5	1	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	t0005	1613	2	2	0	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	t0006	1613	1	1	0	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	t0007	1617	1	0	0	1	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	t0008	1613	1	0	0	1	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	t0009	1613	1	0	0	0	0	1	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	t0010	1612	1	1	0	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	t0011	1613	1	0	1	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL5A1_chr9_134636803_134849843	0/1	t0001	2926	65	15	23	9	7	10	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0002	2926	51	1	14	32	1	3	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0003	2925	21	6	0	11	1	3	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0004	2926	19	11	2	1	2	3	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0005	2926	13	1	1	11	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0006	2926	8	5	0	2	0	1	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0007	2926	7	6	1	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0008	2925	6	5	0	1	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0009	2926	5	3	2	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0010	2927	5	4	1	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0011	2926	5	0	0	5	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0012	2926	4	4	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0013	2926	3	1	2	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0014	2926	3	3	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0015	2927	3	3	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0016	2926	2	0	1	1	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0017	2926	2	2	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0018	2928	2	0	2	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0019	2926	2	2	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0020	2926	2	2	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0021	2926	2	0	0	2	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0022	2926	2	1	1	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0023	2926	2	2	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0024	2926	2	0	0	2	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0025	2926	2	2	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0026	2926	1	1	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0027	2925	1	0	0	0	1	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0028	2926	1	1	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0029	2926	1	1	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0030	2926	1	0	0	1	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0031	2926	1	0	0	1	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0032	2925	1	1	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0033	2913	1	0	0	1	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0034	2926	1	0	0	1	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0035	2925	1	1	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843