JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COL5A1_chr9_134636803_134849843	0/0	t0036	2926	1	0	0	0	1	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0037	2926	1	0	1	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0038	2926	1	0	1	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0039	2926	1	0	1	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0040	2926	1	0	0	0	0	1	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0041	2927	1	1	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0042	2926	1	0	0	0	1	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0043	2926	1	1	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0044	2926	1	1	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0045	2925	1	0	1	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0046	2937	1	1	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0047	2928	1	1	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0048	2926	1	1	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0049	2926	1	0	1	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0050	2926	1	0	0	0	0	1	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0051	2926	1	0	0	0	0	1	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0052	2926	1	0	0	0	0	1	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0053	2928	1	1	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0054	2926	1	0	0	1	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0055	2926	1	0	0	1	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0056	2926	1	0	0	1	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0057	2926	1	1	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	1/0	t0058	2926	1	0	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	t0059	2926	1	0	1	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A2_chr2_189026898_189184761	1/1	t0001	2330	148	40	24	55	7	20	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	t0002	2330	28	0	2	19	2	5	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	t0003	2330	26	7	4	14	0	1	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	t0004	2330	8	5	1	0	1	1	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	t0005	2331	5	0	1	4	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	t0006	2330	3	2	1	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	t0007	2331	3	0	0	3	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	t0008	2330	3	1	0	0	0	2	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	t0009	2330	3	3	0	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	t0010	2328	2	2	0	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	t0011	2330	2	0	2	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	t0012	2330	2	2	0	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	t0013	2330	2	2	0	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	t0014	2328	2	2	0	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	t0015	2328	1	0	1	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	t0016	2330	1	1	0	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	t0017	2331	1	0	0	0	0	1	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	t0018	2330	1	1	0	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	t0019	2330	1	0	0	1	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	t0020	2330	1	0	0	1	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	t0021	2330	1	0	0	0	0	1	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	t0022	2330	1	0	0	0	0	1	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	t0023	2330	1	0	0	1	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	t0024	2330	1	1	0	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	t0025	2330	1	1	0	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A3_chr19_9954561_10015504	0/0	t0001	970	189	36	37	82	10	24	copy fasta	COL5A3	chr19	9954561	10015504