JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COL5A3_chr19_9954561_10015504	0/1	t0002	970	86	22	25	27	4	7	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	1/0	t0003	970	43	3	12	21	1	5	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	t0004	970	21	2	0	16	0	3	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	t0005	970	14	0	2	11	0	1	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	t0006	970	10	1	1	6	0	2	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	t0007	970	10	9	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	t0008	970	7	7	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	t0009	970	6	1	1	1	3	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	t0010	970	5	0	0	5	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	t0011	970	3	3	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	t0012	970	3	3	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	t0013	970	2	2	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	t0014	970	2	2	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	t0015	970	2	2	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	t0016	970	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	t0017	970	1	0	0	0	0	1	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	t0018	970	1	0	1	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	t0019	970	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	t0020	970	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	t0021	970	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	t0022	970	1	0	1	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	t0023	970	1	0	0	0	0	1	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	t0024	970	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL6A1_chr21_45976770_46010048	0/0	t0001	1117	42	17	12	5	6	2	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	t0002	1117	37	5	13	16	2	1	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/1	t0003	1117	15	0	4	1	0	9	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	t0004	1104	7	2	4	0	1	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	t0005	1117	6	6	0	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	t0006	1117	4	0	0	3	0	1	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	1/0	t0007	1117	3	2	0	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	t0008	1104	3	1	1	0	0	1	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	t0009	1117	3	3	0	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	t0010	1117	2	2	0	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	t0011	1131	1	0	0	0	0	1	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	t0012	1117	1	0	0	0	0	1	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	t0013	1117	1	0	0	1	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	t0014	1117	1	0	0	0	1	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	t0015	1117	1	0	0	1	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	t0016	1117	1	0	0	1	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A2_chr21_46093112_46134801	0/1	t0001	400	151	19	39	68	6	18	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	t0002	400	85	11	4	65	0	5	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	1/0	t0003	400	49	15	4	10	5	14	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	t0004	400	18	10	4	2	1	1	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	t0005	400	15	14	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	t0006	400	14	13	1	0	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	t0007	400	13	0	2	6	3	2	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	t0008	400	9	4	1	1	0	3	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	t0009	400	7	0	4	0	3	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	t0010	400	4	0	3	0	0	1	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	t0011	400	2	2	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46134801