JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COL6A2_chr21_46093112_46134801	0/0	t0012	400	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	t0013	400	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	t0014	400	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	t0015	400	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	t0016	400	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46137848	1/0	t0001	386	224	49	47	78	14	35	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	t0002	386	85	11	8	63	0	3	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	t0003	386	20	7	2	6	3	2	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	t0004	386	13	9	2	0	1	1	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	t0005	386	6	6	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/1	t0006	386	4	0	2	0	0	1	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	t0007	386	3	3	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	t0008	386	2	0	0	0	0	2	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	t0009	386	1	1	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	t0010	386	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	t0011	386	1	0	1	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	t0012	386	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	t0013	386	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	t0014	386	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	t0015	386	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A3_chr2_237319018_237419164	0/1	t0001	999	116	27	30	39	3	16	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	1/0	t0002	999	108	13	21	56	3	14	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	t0003	999	54	12	8	24	0	10	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	t0004	999	21	19	2	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	t0005	1000	13	13	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	t0006	999	2	0	0	2	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	t0007	999	2	0	1	0	0	1	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	t0008	1000	2	2	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	t0009	999	1	0	0	1	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	t0010	999	1	0	0	0	0	1	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	t0011	999	1	1	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	t0012	999	1	1	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A5_chr3_130340672_130489846	0/0	t0001	1107	103	29	12	53	0	9	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/1	t0002	1107	98	10	29	34	5	19	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	t0003	1107	34	22	9	0	0	3	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	1/0	t0004	1125	10	1	0	7	0	1	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	t0005	1126	9	6	0	2	0	1	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	t0006	1106	9	1	8	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	t0007	1106	5	0	0	1	0	4	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	t0008	1106	5	1	1	3	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	t0009	1107	5	0	5	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	t0010	1126	4	0	1	0	1	2	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	t0011	1107	4	4	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	t0012	1107	2	1	1	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	t0013	1125	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	t0014	1106	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	t0015	1106	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	t0016	1107	1	0	0	0	0	1	copy fasta	COL6A5	chr3	130340672	130489846
COL6A6_chr3_130512177_130682042	0/0	t0001	1898	61	23	12	16	1	9	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	1/1	t0002	1898	42	7	3	24	1	5	copy fasta	COL6A6	chr3	130512177	130682042