JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COL6A6_chr3_130512177_130682042	0/0	t0003	1898	40	9	13	12	0	6	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	t0004	1898	34	24	7	0	0	3	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	t0005	1898	19	1	5	12	0	1	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	t0006	1898	13	0	1	11	0	1	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	t0007	1898	10	5	2	0	0	3	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	t0008	1898	9	0	1	6	0	2	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	t0009	1898	7	0	1	5	0	1	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	t0010	1898	6	0	1	3	0	2	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	t0011	1898	3	1	0	0	0	2	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	t0012	1898	2	2	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	t0013	1898	1	0	0	1	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	t0014	1898	1	1	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	t0015	1898	1	1	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	t0016	1898	1	0	0	1	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	t0017	1898	1	0	0	1	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	t0018	1898	1	0	0	1	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	t0019	1898	1	0	0	1	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	t0020	1898	1	1	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	t0021	1898	1	1	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	t0022	1898	1	0	0	1	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	t0023	1898	1	1	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	t0024	1898	1	0	0	0	0	1	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	t0025	1898	1	1	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	t0026	1898	1	0	0	1	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	t0027	1898	1	1	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	t0028	1898	1	1	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	t0029	1898	1	0	0	0	0	1	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	t0030	1898	1	0	0	0	0	1	copy fasta	COL6A6	chr3	130512177	130682042
COL7A1_chr3_48559073_48600329	1/1	t0001	396	230	66	59	72	7	24	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	t0002	396	3	0	2	0	1	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	t0003	397	2	2	0	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	t0004	396	1	0	1	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL8A1_chr3_99633594_99804217	0/1	t0001	3277	99	23	21	38	5	11	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	1/0	t0002	3281	39	2	11	13	3	9	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0003	3279	24	3	2	17	0	2	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0004	3277	18	5	3	4	1	5	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0005	3281	16	2	6	3	0	5	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0006	3279	9	3	4	1	0	1	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0007	3277	6	5	1	0	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0008	3277	4	4	0	0	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0009	3277	4	0	1	2	0	1	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0010	3281	4	4	0	0	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0011	3277	3	3	0	0	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0012	3281	3	0	1	0	0	2	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0013	3281	3	2	0	0	0	1	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0014	3273	3	3	0	0	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0015	3275	2	0	0	0	2	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0016	3277	2	2	0	0	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0017	3277	2	2	0	0	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0018	3281	2	0	0	2	0	0	copy fasta	COL8A1	chr3	99633594	99804217