JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COL8A1_chr3_99633594_99804217	0/0	t0019	3281	1	0	1	0	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0020	3281	1	0	0	1	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0021	3281	1	1	0	0	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0022	3277	1	0	0	0	1	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0023	3281	1	1	0	0	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0024	3277	1	1	0	0	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0025	3277	1	1	0	0	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0026	3281	1	1	0	0	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0027	3279	1	0	0	1	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0028	3275	1	1	0	0	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0029	3279	1	1	0	0	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0030	3277	1	0	1	0	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0031	3281	1	1	0	0	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0032	3277	1	0	0	1	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0033	3279	1	0	0	0	0	1	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0034	3279	1	0	0	1	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0035	3277	1	1	0	0	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0036	3279	1	1	0	0	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	t0037	3281	1	1	0	0	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A2_chr1_36090239_36130222	0/1	t0001	2558	191	39	33	88	6	24	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	t0002	2558	129	17	18	91	0	3	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	1/0	t0003	2558	19	4	7	0	2	5	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	t0004	2558	16	14	2	0	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	t0005	2558	6	6	0	0	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	t0006	2559	4	1	1	2	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	t0007	2558	3	3	0	0	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	t0008	2559	3	0	0	3	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	t0009	2558	2	0	0	2	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	t0010	2558	2	0	0	1	0	1	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	t0011	2558	1	0	0	1	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	t0012	2558	1	0	0	1	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	t0013	2559	1	1	0	0	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	t0014	2558	1	0	0	1	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	t0015	2558	1	1	0	0	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	t0016	2558	1	1	0	0	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	t0017	2558	1	1	0	0	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	t0018	2558	1	1	0	0	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	t0019	2558	1	0	0	1	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	t0020	2558	1	0	1	0	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	t0021	2558	1	0	1	0	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	t0022	2558	1	1	0	0	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	t0023	2545	1	0	1	0	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	t0024	2558	1	0	0	0	0	1	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	t0025	2558	1	0	0	1	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL9A1_chr6_70211126_70308084	0/0	t0001	932	130	29	34	49	4	14	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	t0002	933	100	7	25	54	3	11	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	1/1	t0003	932	83	15	5	50	5	6	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	t0004	934	18	11	1	1	0	5	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	t0005	934	9	6	3	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	t0006	932	7	7	0	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084