JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COL9A1_chr6_70211126_70308084	0/0	t0007	932	5	5	0	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	t0008	932	3	3	0	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	t0009	933	2	0	0	0	0	2	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	t0010	933	2	2	0	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	t0011	932	1	1	0	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	t0012	932	1	1	0	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	t0013	932	1	1	0	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A2_chr1_40295489_40322286	1/1	t0001	783	396	77	73	185	17	42	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	t0002	783	21	3	1	10	1	6	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	t0003	782	13	11	2	0	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	t0004	783	4	4	0	0	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	t0005	783	2	0	0	2	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	t0006	783	1	0	0	1	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	t0007	783	1	1	0	0	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A3_chr20_62812050_62846159	1/1	t0001	443	321	52	67	155	10	35	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	t0002	443	44	16	5	20	0	3	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	t0003	443	22	4	11	0	3	4	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	t0004	443	8	7	1	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	t0005	443	5	5	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	t0006	443	5	5	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	t0007	443	3	3	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	t0008	443	2	0	0	2	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	t0009	443	1	0	0	0	1	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	t0010	443	1	0	0	1	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COLEC10_chr8_119062247_119113455	0/0	t0001	2300	134	27	18	68	4	17	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	1/1	t0002	2300	93	2	22	55	3	9	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	0/0	t0003	2300	58	12	5	40	1	0	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	0/0	t0004	2300	30	28	1	0	1	0	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	0/0	t0005	2300	25	3	7	3	2	10	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	0/0	t0006	2300	19	3	2	8	0	6	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	0/0	t0007	2299	8	8	0	0	0	0	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	0/0	t0008	2300	4	3	1	0	0	0	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	0/0	t0009	2300	2	2	0	0	0	0	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	0/0	t0010	2300	2	0	0	2	0	0	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	0/0	t0011	2300	2	0	0	2	0	0	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	0/0	t0012	2300	1	0	1	0	0	0	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	0/0	t0013	2300	1	0	0	1	0	0	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	0/0	t0014	2300	1	0	1	0	0	0	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	0/0	t0015	2300	1	1	0	0	0	0	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	0/0	t0016	2300	1	0	1	0	0	0	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	0/0	t0017	2300	1	0	1	0	0	0	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	0/0	t0018	2300	1	0	0	1	0	0	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	0/0	t0019	2300	1	1	0	0	0	0	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	0/0	t0020	2300	1	0	0	0	1	0	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	0/0	t0021	2300	1	1	0	0	0	0	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	0/0	t0022	2299	1	1	0	0	0	0	copy fasta	COLEC10	chr8	119062247	119113455
COLEC11_chr2_3590112_3649644	1/1	t0001	610	366	91	74	146	16	37	copy fasta	COLEC11	chr2	3590112	3649644
COLEC11_chr2_3590112_3649644	0/0	t0002	610	7	7	0	0	0	0	copy fasta	COLEC11	chr2	3590112	3649644
COLEC11_chr2_3590112_3649644	0/0	t0003	610	3	0	0	3	0	0	copy fasta	COLEC11	chr2	3590112	3649644
COLEC11_chr2_3590112_3649644	0/0	t0004	610	1	0	0	1	0	0	copy fasta	COLEC11	chr2	3590112	3649644