JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COLEC11_chr2_3590112_3649644	0/0	t0005	610	1	0	0	0	0	1	copy fasta	COLEC11	chr2	3590112	3649644
COLEC12_chr18_311737_505701	0/0	t0001	3470	15	0	0	14	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0002	3471	9	0	2	7	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0003	3469	8	1	2	1	3	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0004	3471	7	0	0	7	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0005	3469	7	0	1	3	0	3	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0006	3471	5	0	4	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0007	3479	5	0	0	5	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0008	3470	5	0	0	5	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	1/0	t0009	3496	5	3	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0010	3479	4	0	0	4	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0011	3472	3	1	2	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0012	3470	3	0	0	2	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0013	3471	3	0	3	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0014	3479	3	0	0	3	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0015	3470	3	0	1	0	2	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0016	3470	3	0	0	2	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0017	3470	3	0	3	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0018	3470	3	0	0	3	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0019	3497	3	2	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0020	3467	3	0	0	2	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0021	3467	3	1	2	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0022	3472	2	0	0	2	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0023	3472	2	0	0	2	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0024	3472	2	0	1	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0025	3474	2	0	0	2	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0026	3470	2	0	2	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0027	3472	2	0	0	2	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0028	3489	2	0	0	2	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0029	3481	2	0	2	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0030	3487	2	0	0	2	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0031	3478	2	2	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0032	3484	2	0	0	2	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0033	3476	2	2	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0034	3470	2	0	0	1	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0035	3472	2	0	0	2	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0036	3472	2	0	0	2	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0037	3469	2	0	0	0	0	2	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0038	3469	2	0	1	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0039	3470	2	0	1	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0040	3471	2	0	0	2	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0041	3496	2	2	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0042	3487	2	2	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0043	3487	2	2	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0044	3469	2	0	2	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/1	t0045	3469	2	0	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0046	3469	2	0	2	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0047	3469	2	2	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0048	3467	2	0	2	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0049	3467	2	0	0	0	2	0	copy fasta	COLEC12	chr18	311737	505701