JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COLEC12_chr18_311737_505701	0/0	t0050	3470	1	0	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0051	3475	1	0	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0052	3493	1	0	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0053	3470	1	0	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0054	3479	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0055	3468	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0056	3471	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0057	3471	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0058	3473	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0059	3472	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0060	3473	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0061	3476	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0062	3471	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0063	3470	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0064	3471	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0065	3472	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0066	3472	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0067	3471	1	0	0	0	1	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0068	3471	1	0	0	0	1	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0069	3471	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0070	3473	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0071	3472	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0072	3473	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0073	3471	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0074	3471	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0075	3470	1	0	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0076	3470	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0077	3470	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0078	3470	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0079	3470	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0080	3471	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0081	3471	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0082	3471	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0083	3471	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0084	3471	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0085	3471	1	0	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0086	3471	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0087	3471	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0088	3471	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0089	3476	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0090	3477	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0091	3476	1	0	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0092	3475	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0093	3475	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0094	3469	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0095	3468	1	0	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0096	3471	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0097	3471	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0098	3470	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0099	3470	1	0	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701