Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADGRA1_chr10_133082924_133136675	0/0	t0054	2870	1	0	1	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	t0055	2680	1	0	1	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	t0056	2532	1	0	1	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	t0057	2582	1	0	1	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	t0058	2582	1	1	0	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	t0059	2632	1	1	0	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	t0060	2657	1	1	0	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	t0061	2730	1	0	0	0	0	1	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	t0062	2556	1	0	1	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	t0063	2582	1	0	0	1	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	t0064	2582	1	1	0	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	t0065	2607	1	1	0	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	t0066	2607	1	1	0	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	t0067	2632	1	1	0	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	t0068	2558	1	1	0	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	t0069	2556	1	0	0	1	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	t0070	2529	1	0	0	1	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	t0071	2556	1	0	0	1	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	t0072	2558	1	0	0	0	0	1	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	t0073	2559	1	1	0	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	t0074	2532	1	0	0	0	1	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	t0075	2557	1	0	0	1	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	t0076	2582	1	1	0	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	t0077	2582	1	0	0	1	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	t0078	2730	1	0	1	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	t0079	2680	1	1	0	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	t0080	2582	1	0	1	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA2_chr8_37791883_37849896	1/1	t0001	2928	336	71	71	133	13	46	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	t0002	2928	5	5	0	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	t0003	2928	4	0	0	4	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	t0004	2928	4	4	0	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	t0005	2928	2	2	0	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	t0006	2928	2	0	0	0	0	2	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	t0007	2928	2	2	0	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	t0008	2928	2	0	0	2	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	t0009	2928	1	0	0	1	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	t0010	2928	1	0	0	1	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	t0011	2928	1	1	0	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	t0012	2928	1	1	0	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	t0013	2928	1	0	0	1	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	t0014	2918	1	1	0	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	t0015	2928	1	0	0	1	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	t0016	2928	1	0	0	1	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	t0017	2928	1	0	0	1	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	t0018	2928	1	0	0	0	1	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	t0019	2928	1	0	1	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	t0020	2928	1	1	0	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	t0021	2928	1	0	0	1	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA3_chr4_22382376_22521066	1/1	t0001	612	261	76	50	97	6	30	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	t0002	618	17	3	0	11	0	3	copy fasta	ADGRA3	chr4	22382376	22521066