JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COLEC12_chr18_311737_505701	0/0	t0100	3470	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0101	3475	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0102	3493	1	0	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0103	3499	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0104	3496	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0105	3495	1	0	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0106	3495	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0107	3497	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0108	3496	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0109	3500	1	0	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0110	3489	1	0	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0111	3496	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0112	3495	1	0	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0113	3494	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0114	3495	1	0	0	0	1	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0115	3492	1	0	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0116	3494	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0117	3493	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0118	3497	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0119	3491	1	0	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0120	3490	1	0	0	0	1	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0121	3491	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0122	3488	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0123	3488	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0124	3487	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0125	3486	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0126	3479	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0127	3485	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0128	3479	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0129	3479	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0130	3479	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0131	3479	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0132	3477	1	0	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0133	3479	1	0	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0134	3479	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0135	3479	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0136	3479	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0137	3479	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0138	3478	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0139	3477	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0140	3479	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0141	3478	1	0	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0142	3480	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0143	3480	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0144	3479	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0145	3470	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0146	3470	1	0	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0147	3472	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0148	3472	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0149	3474	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701