JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COLEC12_chr18_311737_505701	0/0	t0150	3474	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0151	3479	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0152	3470	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0153	3469	1	0	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0154	3468	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0155	3471	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0156	3473	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0157	3473	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0158	3474	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0159	3479	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0160	3478	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0161	3478	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0162	3478	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0163	3479	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0164	3470	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0165	3469	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0166	3468	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0167	3469	1	0	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0168	3470	1	0	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0169	3471	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0170	3469	1	0	0	0	1	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0171	3471	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0172	3470	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0173	3470	1	0	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0174	3469	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0175	3470	1	0	0	0	1	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0176	3469	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0177	3472	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0178	3471	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0179	3470	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0180	3470	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0181	3470	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0182	3469	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0183	3471	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0184	3479	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0185	3478	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0186	3479	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0187	3473	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0188	3468	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0189	3471	1	0	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0190	3486	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0191	3488	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0192	3487	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0193	3497	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0194	3462	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0195	3469	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0196	3484	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0197	3477	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0198	3477	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0199	3477	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701