JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COLEC12_chr18_311737_505701	0/0	t0250	3479	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0251	3491	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0252	3488	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0253	3486	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0254	3486	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0255	3477	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	t0256	3478	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLGALT1_chr19_17550649_17588157	0/0	t0001	1779	73	2	9	55	0	7	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0002	1781	51	6	5	30	1	9	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0003	1779	37	4	10	8	6	9	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0004	1780	31	0	16	10	1	4	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0005	1779	22	8	3	9	1	1	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0006	1780	18	3	4	7	0	4	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0007	1780	15	12	3	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0008	1779	11	11	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0009	1779	11	2	2	4	2	1	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0010	1780	11	3	4	3	1	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0011	1780	7	6	0	1	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0012	1780	7	7	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0013	1779	6	2	2	0	0	2	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	1/0	t0014	1779	6	0	0	4	0	1	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0015	1780	6	0	0	4	0	2	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/1	t0016	1781	5	0	3	0	1	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0017	1782	5	1	2	1	0	1	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0018	1780	4	1	1	1	0	1	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0019	1780	4	4	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0020	1781	4	0	2	0	2	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0021	1778	3	1	2	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0022	1779	3	3	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0023	1779	3	0	3	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0024	1780	3	0	0	3	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0025	1781	3	0	0	3	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0026	1778	3	0	0	2	0	1	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0027	1779	2	0	1	0	1	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0028	1779	2	0	1	1	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0029	1779	2	2	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0030	1779	2	2	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0031	1780	2	0	0	1	0	1	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0032	1781	2	2	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0033	1779	2	0	0	2	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0034	1780	2	0	0	2	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0035	1780	1	0	1	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0036	1779	1	0	0	1	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0037	1779	1	1	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0038	1779	1	1	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0039	1780	1	1	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0040	1778	1	1	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0041	1779	1	0	0	1	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0042	1779	1	1	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0043	1779	1	1	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157