JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COLGALT1_chr19_17550649_17588157	0/0	t0044	1779	1	1	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0045	1779	1	1	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0046	1779	1	1	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0047	1779	1	1	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0048	1779	1	0	1	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0049	1779	1	0	0	0	0	1	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0050	1780	1	0	1	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0051	1780	1	0	0	1	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0052	1780	1	1	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0053	1780	1	1	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0054	1781	1	1	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0055	1781	1	0	0	0	0	1	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0056	1781	1	0	0	1	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0057	1782	1	0	0	1	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0058	1782	1	1	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0059	1778	1	0	0	1	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0060	1780	1	0	0	1	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0061	1780	1	0	0	1	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	t0062	1781	1	0	0	1	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT2_chr1_183930834_184042728	0/0	t0001	3299	52	11	10	22	2	7	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0002	3303	41	5	9	21	2	4	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	1/0	t0003	3299	39	0	11	20	1	6	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0004	3299	38	4	6	21	1	6	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0005	3298	37	5	11	11	5	5	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0006	3303	16	0	4	11	0	1	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/1	t0007	3299	15	5	4	4	0	1	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0008	3298	13	2	3	4	0	4	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0009	3299	12	12	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0010	3299	10	10	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0011	3299	9	0	0	7	1	1	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0012	3298	8	7	1	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0013	3300	6	4	1	0	0	1	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0014	3299	5	1	0	4	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0015	3297	4	0	3	0	1	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0016	3298	3	3	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0017	3299	2	2	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0018	3300	2	1	1	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0019	3299	2	1	1	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0020	3299	1	1	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0021	3303	1	1	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0022	3299	1	1	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0023	3299	1	1	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0024	3299	1	1	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0025	3299	1	1	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0026	3303	1	0	0	0	0	1	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0027	3298	1	1	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0028	3300	1	1	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0029	3299	1	0	0	1	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0030	3299	1	0	0	0	0	1	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0031	3298	1	0	1	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728