JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COLGALT2_chr1_183930834_184042728	0/0	t0032	3299	1	0	0	0	0	1	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0033	3303	1	0	0	0	0	1	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0034	3304	1	0	0	0	1	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0035	3299	1	1	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0036	3300	1	1	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0037	3299	1	0	1	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0038	3299	1	1	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0039	3297	1	0	1	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0040	3298	1	1	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0041	3300	1	0	0	1	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0042	3299	1	1	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0043	3298	1	0	0	1	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0044	3303	1	1	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	t0045	3298	1	1	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLQ_chr3_15445133_15526706	1/0	t0001	1593	160	30	38	67	7	17	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/1	t0002	1593	88	17	17	39	5	9	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	t0003	1593	76	7	10	53	0	6	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	t0004	1593	16	13	1	2	0	0	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	t0005	1593	16	14	2	0	0	0	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	t0006	1593	8	1	0	6	0	1	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	t0007	1593	4	0	0	4	0	0	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	t0008	1593	3	3	0	0	0	0	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	t0009	1593	2	0	0	2	0	0	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	t0010	1593	2	2	0	0	0	0	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	t0011	1593	1	0	0	0	0	1	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	t0012	1593	1	1	0	0	0	0	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	t0013	1593	1	1	0	0	0	0	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	t0014	1593	1	1	0	0	0	0	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	t0015	1593	1	1	0	0	0	0	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	t0016	1593	1	1	0	0	0	0	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	t0017	1593	1	0	0	1	0	0	copy fasta	COLQ	chr3	15445133	15526706
COMMD10_chr5_116080025_116298287	1/1	t0001	827	336	74	62	153	12	33	copy fasta	COMMD10	chr5	116080025	116298287
COMMD10_chr5_116080025_116298287	0/0	t0002	827	6	6	0	0	0	0	copy fasta	COMMD10	chr5	116080025	116298287
COMMD10_chr5_116080025_116298287	0/0	t0003	827	3	3	0	0	0	0	copy fasta	COMMD10	chr5	116080025	116298287
COMMD10_chr5_116080025_116298287	0/0	t0004	827	2	2	0	0	0	0	copy fasta	COMMD10	chr5	116080025	116298287
COMMD10_chr5_116080025_116298287	0/0	t0005	827	1	1	0	0	0	0	copy fasta	COMMD10	chr5	116080025	116298287
COMMD10_chr5_116080025_116298287	0/0	t0006	827	1	0	0	1	0	0	copy fasta	COMMD10	chr5	116080025	116298287
COMMD10_chr5_116080025_116298287	0/0	t0007	827	1	0	0	0	0	1	copy fasta	COMMD10	chr5	116080025	116298287
COMMD1_chr2_61900674_62141058	1/1	t0001	123	253	57	35	121	10	28	copy fasta	COMMD1	chr2	61900674	62141058
COMMD1_chr2_61900674_62141058	0/0	t0002	123	16	15	1	0	0	0	copy fasta	COMMD1	chr2	61900674	62141058
COMMD1_chr2_61900674_62141058	0/0	t0003	123	16	16	0	0	0	0	copy fasta	COMMD1	chr2	61900674	62141058
COMMD1_chr2_61900674_62141058	0/0	t0004	123	1	0	0	1	0	0	copy fasta	COMMD1	chr2	61900674	62141058
COMMD2_chr3_149733472_149757489	1/1	t0001	3095	244	50	40	122	8	22	copy fasta	COMMD2	chr3	149733472	149757489
COMMD2_chr3_149733472_149757489	0/0	t0002	3095	81	14	15	34	5	13	copy fasta	COMMD2	chr3	149733472	149757489
COMMD2_chr3_149733472_149757489	0/0	t0003	3095	34	11	5	13	0	5	copy fasta	COMMD2	chr3	149733472	149757489
COMMD2_chr3_149733472_149757489	0/0	t0004	3095	29	0	3	24	0	2	copy fasta	COMMD2	chr3	149733472	149757489
COMMD2_chr3_149733472_149757489	0/0	t0005	3095	5	3	2	0	0	0	copy fasta	COMMD2	chr3	149733472	149757489
COMMD2_chr3_149733472_149757489	0/0	t0006	3095	4	4	0	0	0	0	copy fasta	COMMD2	chr3	149733472	149757489
COMMD2_chr3_149733472_149757489	0/0	t0007	3095	4	4	0	0	0	0	copy fasta	COMMD2	chr3	149733472	149757489
COMMD2_chr3_149733472_149757489	0/0	t0008	3095	4	4	0	0	0	0	copy fasta	COMMD2	chr3	149733472	149757489