JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COMMD2_chr3_149733472_149757489	0/0	t0009	3094	3	3	0	0	0	0	copy fasta	COMMD2	chr3	149733472	149757489
COMMD2_chr3_149733472_149757489	0/0	t0010	3095	3	0	2	0	1	0	copy fasta	COMMD2	chr3	149733472	149757489
COMMD2_chr3_149733472_149757489	0/0	t0011	3095	2	2	0	0	0	0	copy fasta	COMMD2	chr3	149733472	149757489
COMMD2_chr3_149733472_149757489	0/0	t0012	3095	2	0	0	0	0	2	copy fasta	COMMD2	chr3	149733472	149757489
COMMD2_chr3_149733472_149757489	0/0	t0013	3095	1	1	0	0	0	0	copy fasta	COMMD2	chr3	149733472	149757489
COMMD2_chr3_149733472_149757489	0/0	t0014	3095	1	0	0	1	0	0	copy fasta	COMMD2	chr3	149733472	149757489
COMMD2_chr3_149733472_149757489	0/0	t0015	3095	1	1	0	0	0	0	copy fasta	COMMD2	chr3	149733472	149757489
COMMD2_chr3_149733472_149757489	0/0	t0016	3095	1	0	0	1	0	0	copy fasta	COMMD2	chr3	149733472	149757489
COMMD2_chr3_149733472_149757489	0/0	t0017	3095	1	0	1	0	0	0	copy fasta	COMMD2	chr3	149733472	149757489
COMMD2_chr3_149733472_149757489	0/0	t0018	3095	1	0	1	0	0	0	copy fasta	COMMD2	chr3	149733472	149757489
COMMD2_chr3_149733472_149757489	0/0	t0019	3095	1	0	0	1	0	0	copy fasta	COMMD2	chr3	149733472	149757489
COMMD2_chr3_149733472_149757489	0/0	t0020	3095	1	0	1	0	0	0	copy fasta	COMMD2	chr3	149733472	149757489
COMMD2_chr3_149733472_149757489	0/0	t0021	3095	1	1	0	0	0	0	copy fasta	COMMD2	chr3	149733472	149757489
COMMD3_chr10_22311388_22325306	1/1	t0001	339	301	93	59	112	8	27	copy fasta	COMMD3	chr10	22311388	22325306
COMMD3_chr10_22311388_22325306	0/0	t0002	339	3	1	1	0	0	1	copy fasta	COMMD3	chr10	22311388	22325306
COMMD3_chr10_22311388_22325306	0/0	t0003	339	2	2	0	0	0	0	copy fasta	COMMD3	chr10	22311388	22325306
COMMD3_chr10_22311388_22325306	0/0	t0004	339	1	1	0	0	0	0	copy fasta	COMMD3	chr10	22311388	22325306
COMMD3_chr10_22311388_22325306	0/0	t0005	339	1	1	0	0	0	0	copy fasta	COMMD3	chr10	22311388	22325306
COMMD4_chr15_75331063_75345273	1/1	t0001	296	389	90	62	179	15	41	copy fasta	COMMD4	chr15	75331063	75345273
COMMD4_chr15_75331063_75345273	0/0	t0002	296	36	3	11	21	0	1	copy fasta	COMMD4	chr15	75331063	75345273
COMMD4_chr15_75331063_75345273	0/0	t0003	296	1	0	0	1	0	0	copy fasta	COMMD4	chr15	75331063	75345273
COMMD4_chr15_75331063_75345273	0/0	t0004	296	1	1	0	0	0	0	copy fasta	COMMD4	chr15	75331063	75345273
COMMD4_chr15_75331063_75345273	0/0	t0005	296	1	0	0	1	0	0	copy fasta	COMMD4	chr15	75331063	75345273
COMMD4_chr15_75331063_75345273	0/0	t0006	296	1	0	1	0	0	0	copy fasta	COMMD4	chr15	75331063	75345273
COMMD4_chr15_75331063_75345273	0/0	t0007	296	1	0	0	0	1	0	copy fasta	COMMD4	chr15	75331063	75345273
COMMD5_chr8_144845176_144858048	1/0	t0001	756	207	51	45	79	11	20	copy fasta	COMMD5	chr8	144845176	144858048
COMMD5_chr8_144845176_144858048	0/1	t0002	756	143	38	30	53	3	18	copy fasta	COMMD5	chr8	144845176	144858048
COMMD5_chr8_144845176_144858048	0/0	t0003	756	69	0	7	62	0	0	copy fasta	COMMD5	chr8	144845176	144858048
COMMD5_chr8_144845176_144858048	0/0	t0004	756	2	2	0	0	0	0	copy fasta	COMMD5	chr8	144845176	144858048
COMMD5_chr8_144845176_144858048	0/0	t0005	756	2	2	0	0	0	0	copy fasta	COMMD5	chr8	144845176	144858048
COMMD5_chr8_144845176_144858048	0/0	t0006	756	1	0	0	1	0	0	copy fasta	COMMD5	chr8	144845176	144858048
COMMD5_chr8_144845176_144858048	0/0	t0007	756	1	1	0	0	0	0	copy fasta	COMMD5	chr8	144845176	144858048
COMMD5_chr8_144845176_144858048	0/0	t0008	756	1	1	0	0	0	0	copy fasta	COMMD5	chr8	144845176	144858048
COMMD5_chr8_144845176_144858048	0/0	t0009	756	1	0	0	1	0	0	copy fasta	COMMD5	chr8	144845176	144858048
COMMD5_chr8_144845176_144858048	0/0	t0010	756	1	1	0	0	0	0	copy fasta	COMMD5	chr8	144845176	144858048
COMMD6_chr13_75520214_75542841	0/1	t0001	1418	240	60	41	116	6	16	copy fasta	COMMD6	chr13	75520214	75542841
COMMD6_chr13_75520214_75542841	0/0	t0002	1412	60	3	11	39	2	5	copy fasta	COMMD6	chr13	75520214	75542841
COMMD6_chr13_75520214_75542841	0/0	t0003	1418	55	11	10	11	5	18	copy fasta	COMMD6	chr13	75520214	75542841
COMMD6_chr13_75520214_75542841	0/0	t0004	1412	13	1	8	0	0	4	copy fasta	COMMD6	chr13	75520214	75542841
COMMD6_chr13_75520214_75542841	1/0	t0005	1412	13	10	0	0	1	1	copy fasta	COMMD6	chr13	75520214	75542841
COMMD6_chr13_75520214_75542841	0/0	t0006	1418	5	0	1	4	0	0	copy fasta	COMMD6	chr13	75520214	75542841
COMMD6_chr13_75520214_75542841	0/0	t0007	1418	3	3	0	0	0	0	copy fasta	COMMD6	chr13	75520214	75542841
COMMD6_chr13_75520214_75542841	0/0	t0008	1412	2	2	0	0	0	0	copy fasta	COMMD6	chr13	75520214	75542841
COMMD6_chr13_75520214_75542841	0/0	t0009	1418	1	0	1	0	0	0	copy fasta	COMMD6	chr13	75520214	75542841
COMMD6_chr13_75520214_75542841	0/0	t0010	1418	1	1	0	0	0	0	copy fasta	COMMD6	chr13	75520214	75542841
COMMD6_chr13_75520214_75542841	0/0	t0011	1418	1	1	0	0	0	0	copy fasta	COMMD6	chr13	75520214	75542841
COMMD6_chr13_75520214_75542841	0/0	t0012	1412	1	1	0	0	0	0	copy fasta	COMMD6	chr13	75520214	75542841
COMMD6_chr13_75520214_75542841	0/0	t0013	1412	1	1	0	0	0	0	copy fasta	COMMD6	chr13	75520214	75542841
COMMD7_chr20_32697699_32748467	0/1	t0001	760	218	48	37	91	13	28	copy fasta	COMMD7	chr20	32697699	32748467
COMMD7_chr20_32697699_32748467	1/0	t0002	760	168	31	38	80	3	15	copy fasta	COMMD7	chr20	32697699	32748467