JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COMMD7_chr20_32697699_32748467	0/0	t0003	759	5	5	0	0	0	0	copy fasta	COMMD7	chr20	32697699	32748467
COMMD7_chr20_32697699_32748467	0/0	t0004	759	4	4	0	0	0	0	copy fasta	COMMD7	chr20	32697699	32748467
COMMD7_chr20_32697699_32748467	0/0	t0005	760	1	1	0	0	0	0	copy fasta	COMMD7	chr20	32697699	32748467
COMMD7_chr20_32697699_32748467	0/0	t0006	760	1	1	0	0	0	0	copy fasta	COMMD7	chr20	32697699	32748467
COMMD7_chr20_32697699_32748467	0/0	t0007	760	1	0	0	1	0	0	copy fasta	COMMD7	chr20	32697699	32748467
COMMD7_chr20_32697699_32748467	0/0	t0008	760	1	0	0	0	0	1	copy fasta	COMMD7	chr20	32697699	32748467
COMMD7_chr20_32697699_32748467	0/0	t0009	760	1	0	1	0	0	0	copy fasta	COMMD7	chr20	32697699	32748467
COMMD8_chr4_47445787_47468702	0/1	t0001	910	371	75	59	179	14	43	copy fasta	COMMD8	chr4	47445787	47468702
COMMD8_chr4_47445787_47468702	0/0	t0002	910	8	8	0	0	0	0	copy fasta	COMMD8	chr4	47445787	47468702
COMMD8_chr4_47445787_47468702	0/0	t0003	910	4	4	0	0	0	0	copy fasta	COMMD8	chr4	47445787	47468702
COMMD8_chr4_47445787_47468702	1/0	t0004	910	3	2	0	0	0	0	copy fasta	COMMD8	chr4	47445787	47468702
COMMD8_chr4_47445787_47468702	0/0	t0005	910	3	3	0	0	0	0	copy fasta	COMMD8	chr4	47445787	47468702
COMMD8_chr4_47445787_47468702	0/0	t0006	910	2	2	0	0	0	0	copy fasta	COMMD8	chr4	47445787	47468702
COMMD8_chr4_47445787_47468702	0/0	t0007	910	1	0	0	1	0	0	copy fasta	COMMD8	chr4	47445787	47468702
COMMD8_chr4_47445787_47468702	0/0	t0008	910	1	1	0	0	0	0	copy fasta	COMMD8	chr4	47445787	47468702
COMMD8_chr4_47445787_47468702	0/0	t0009	910	1	0	1	0	0	0	copy fasta	COMMD8	chr4	47445787	47468702
COMMD8_chr4_47445787_47468702	0/0	t0010	910	1	0	0	0	0	1	copy fasta	COMMD8	chr4	47445787	47468702
COMMD8_chr4_47445787_47468702	0/0	t0011	910	1	1	0	0	0	0	copy fasta	COMMD8	chr4	47445787	47468702
COMMD9_chr11_36267292_36294424	0/1	t0001	2353	233	40	51	100	11	30	copy fasta	COMMD9	chr11	36267292	36294424
COMMD9_chr11_36267292_36294424	0/0	t0002	2353	89	21	6	55	2	5	copy fasta	COMMD9	chr11	36267292	36294424
COMMD9_chr11_36267292_36294424	0/0	t0003	2353	47	9	7	31	0	0	copy fasta	COMMD9	chr11	36267292	36294424
COMMD9_chr11_36267292_36294424	0/0	t0004	2347	34	0	12	21	1	0	copy fasta	COMMD9	chr11	36267292	36294424
COMMD9_chr11_36267292_36294424	0/0	t0005	2353	17	5	2	2	2	6	copy fasta	COMMD9	chr11	36267292	36294424
COMMD9_chr11_36267292_36294424	0/0	t0006	2353	8	8	0	0	0	0	copy fasta	COMMD9	chr11	36267292	36294424
COMMD9_chr11_36267292_36294424	0/0	t0007	2353	5	5	0	0	0	0	copy fasta	COMMD9	chr11	36267292	36294424
COMMD9_chr11_36267292_36294424	0/0	t0008	2353	3	0	0	3	0	0	copy fasta	COMMD9	chr11	36267292	36294424
COMMD9_chr11_36267292_36294424	1/0	t0009	2353	3	2	0	0	0	0	copy fasta	COMMD9	chr11	36267292	36294424
COMMD9_chr11_36267292_36294424	0/0	t0010	2353	2	2	0	0	0	0	copy fasta	COMMD9	chr11	36267292	36294424
COMMD9_chr11_36267292_36294424	0/0	t0011	2353	1	1	0	0	0	0	copy fasta	COMMD9	chr11	36267292	36294424
COMMD9_chr11_36267292_36294424	0/0	t0012	2353	1	1	0	0	0	0	copy fasta	COMMD9	chr11	36267292	36294424
COMMD9_chr11_36267292_36294424	0/0	t0013	2343	1	1	0	0	0	0	copy fasta	COMMD9	chr11	36267292	36294424
COMMD9_chr11_36267292_36294424	0/0	t0014	2353	1	0	1	0	0	0	copy fasta	COMMD9	chr11	36267292	36294424
COMMD9_chr11_36267292_36294424	0/0	t0015	2353	1	0	1	0	0	0	copy fasta	COMMD9	chr11	36267292	36294424
COMMD9_chr11_36267292_36294424	0/0	t0016	2353	1	1	0	0	0	0	copy fasta	COMMD9	chr11	36267292	36294424
COMMD9_chr11_36267292_36294424	0/0	t0017	2353	1	0	0	0	0	1	copy fasta	COMMD9	chr11	36267292	36294424
COMP_chr19_18777773_18796305	1/1	t0001	179	367	75	76	149	18	47	copy fasta	COMP	chr19	18777773	18796305
COMP_chr19_18777773_18796305	0/0	t0002	179	27	22	5	0	0	0	copy fasta	COMP	chr19	18777773	18796305
COMP_chr19_18777773_18796305	0/0	t0003	179	2	1	1	0	0	0	copy fasta	COMP	chr19	18777773	18796305
COMP_chr19_18777773_18796305	0/0	t0004	179	1	0	0	1	0	0	copy fasta	COMP	chr19	18777773	18796305
COMP_chr19_18777773_18796305	0/0	t0005	179	1	0	0	0	0	1	copy fasta	COMP	chr19	18777773	18796305
COMTD1_chr10_75228641_75240957	1/1	t0001	462	408	88	72	194	16	36	copy fasta	COMTD1	chr10	75228641	75240957
COMTD1_chr10_75228641_75240957	0/0	t0002	462	2	2	0	0	0	0	copy fasta	COMTD1	chr10	75228641	75240957
COMT_chr22_19936772_19974975	0/0	t0001	1458	201	22	35	114	9	21	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	1/0	t0002	1457	81	5	11	57	3	4	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/1	t0003	1457	38	15	16	0	1	5	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	t0004	1457	28	27	1	0	0	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	t0005	1458	22	5	6	7	1	3	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	t0006	1457	14	3	3	6	0	2	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	t0007	1458	8	0	3	1	1	3	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	t0008	1457	4	4	0	0	0	0	copy fasta	COMT	chr22	19936772	19974975