JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COMT_chr22_19936772_19974975	0/0	t0009	1458	4	4	0	0	0	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	t0010	1457	3	0	0	3	0	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	t0011	1458	2	2	0	0	0	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	t0012	1458	2	0	0	2	0	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	t0013	1458	2	1	0	0	1	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	t0014	1458	1	0	0	0	0	1	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	t0015	1458	1	0	1	0	0	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	t0016	1458	1	0	0	0	0	1	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	t0017	1458	1	0	0	1	0	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	t0018	1458	1	1	0	0	0	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	t0019	1457	1	0	0	1	0	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	t0020	1447	1	0	0	1	0	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	t0021	1456	1	0	0	1	0	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	t0022	1457	1	0	0	0	0	1	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	t0023	1457	1	0	0	1	0	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	t0024	1457	1	0	0	0	0	1	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	t0025	1457	1	1	0	0	0	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	t0026	1457	1	0	0	1	0	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	t0027	1457	1	1	0	0	0	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	t0028	1457	1	1	0	0	0	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	t0029	1457	1	1	0	0	0	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	t0030	1473	1	1	0	0	0	0	copy fasta	COMT	chr22	19936772	19974975
COP1_chr1_175939831_176212286	1/0	t0001	631	234	62	50	97	4	20	copy fasta	COP1	chr1	175939831	176212286
COP1_chr1_175939831_176212286	0/0	t0002	631	27	15	2	4	0	6	copy fasta	COP1	chr1	175939831	176212286
COP1_chr1_175939831_176212286	0/1	t0003	633	19	4	12	0	1	1	copy fasta	COP1	chr1	175939831	176212286
COP1_chr1_175939831_176212286	0/0	t0004	633	10	3	2	2	0	3	copy fasta	COP1	chr1	175939831	176212286
COP1_chr1_175939831_176212286	0/0	t0005	633	2	0	0	0	1	1	copy fasta	COP1	chr1	175939831	176212286
COP1_chr1_175939831_176212286	0/0	t0006	631	1	0	0	1	0	0	copy fasta	COP1	chr1	175939831	176212286
COP1_chr1_175939831_176212286	0/0	t0007	631	1	0	0	1	0	0	copy fasta	COP1	chr1	175939831	176212286
COP1_chr1_175939831_176212286	0/0	t0008	631	1	0	0	0	0	1	copy fasta	COP1	chr1	175939831	176212286
COP1_chr1_175939831_176212286	0/0	t0009	631	1	0	0	1	0	0	copy fasta	COP1	chr1	175939831	176212286
COP1_chr1_175939831_176212286	0/0	t0010	631	1	0	0	0	0	1	copy fasta	COP1	chr1	175939831	176212286
COP1_chr1_175939831_176212286	0/0	t0011	631	1	1	0	0	0	0	copy fasta	COP1	chr1	175939831	176212286
COP1_chr1_175939831_176212286	0/0	t0012	631	1	1	0	0	0	0	copy fasta	COP1	chr1	175939831	176212286
COP1_chr1_175939831_176212286	0/0	t0013	631	1	0	0	0	0	1	copy fasta	COP1	chr1	175939831	176212286
COPA_chr1_160283594_160348250	0/0	t0001	1643	141	9	43	61	7	21	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	1/1	t0002	1644	122	12	28	65	4	11	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	t0003	1645	17	17	0	0	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	t0004	1645	16	12	2	2	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	t0005	1644	15	2	1	12	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	t0006	1642	15	4	0	11	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	t0007	1643	14	14	0	0	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	t0008	1643	8	8	0	0	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	t0009	1643	5	0	0	5	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	t0010	1643	4	4	0	0	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	t0011	1643	3	3	0	0	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	t0012	1645	1	1	0	0	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	t0013	1643	1	1	0	0	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	t0014	1644	1	0	0	1	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	t0015	1643	1	1	0	0	0	0	copy fasta	COPA	chr1	160283594	160348250