JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COPA_chr1_160283594_160348250	0/0	t0016	1642	1	0	0	1	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	t0017	1643	1	0	0	0	1	0	copy fasta	COPA	chr1	160283594	160348250
COPB1_chr11_14452512_14504811	0/0	t0001	475	284	69	56	119	9	31	copy fasta	COPB1	chr11	14452512	14504811
COPB1_chr11_14452512_14504811	1/1	t0002	475	96	12	12	51	7	12	copy fasta	COPB1	chr11	14452512	14504811
COPB1_chr11_14452512_14504811	0/0	t0003	472	3	2	0	0	0	1	copy fasta	COPB1	chr11	14452512	14504811
COPB1_chr11_14452512_14504811	0/0	t0004	475	3	3	0	0	0	0	copy fasta	COPB1	chr11	14452512	14504811
COPB2_chr3_139352406_139394647	1/1	t0001	555	260	92	60	63	11	32	copy fasta	COPB2	chr3	139352406	139394647
COPB2_chr3_139352406_139394647	0/0	t0002	555	2	0	0	0	1	1	copy fasta	COPB2	chr3	139352406	139394647
COPB2_chr3_139352406_139394647	0/0	t0003	555	1	0	0	1	0	0	copy fasta	COPB2	chr3	139352406	139394647
COPB2_chr3_139352406_139394647	0/0	t0004	555	1	0	0	0	0	1	copy fasta	COPB2	chr3	139352406	139394647
COPE_chr19_18894514_18924387	1/1	t0001	205	330	94	56	120	14	44	copy fasta	COPE	chr19	18894514	18924387
COPG1_chr3_129244606_129282773	0/1	t0001	455	156	24	34	73	6	18	copy fasta	COPG1	chr3	129244606	129282773
COPG1_chr3_129244606_129282773	1/0	t0002	454	126	35	26	40	5	19	copy fasta	COPG1	chr3	129244606	129282773
COPG1_chr3_129244606_129282773	0/0	t0003	453	31	20	9	0	1	1	copy fasta	COPG1	chr3	129244606	129282773
COPG1_chr3_129244606_129282773	0/0	t0004	455	8	8	0	0	0	0	copy fasta	COPG1	chr3	129244606	129282773
COPG1_chr3_129244606_129282773	0/0	t0005	454	2	1	1	0	0	0	copy fasta	COPG1	chr3	129244606	129282773
COPG1_chr3_129244606_129282773	0/0	t0006	454	2	0	0	2	0	0	copy fasta	COPG1	chr3	129244606	129282773
COPG1_chr3_129244606_129282773	0/0	t0007	454	1	0	0	1	0	0	copy fasta	COPG1	chr3	129244606	129282773
COPG2_chr7_130501238_130673748	1/0	t0001	519	179	65	25	59	10	19	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/1	t0002	518	85	8	18	39	3	16	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	t0003	512	20	0	6	9	1	4	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	t0004	520	12	2	4	2	0	4	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	t0005	519	9	6	3	0	0	0	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	t0006	519	8	2	2	3	0	1	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	t0007	519	5	3	2	0	0	0	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	t0008	518	3	3	0	0	0	0	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	t0009	520	2	2	0	0	0	0	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	t0010	519	1	0	0	1	0	0	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	t0011	520	1	1	0	0	0	0	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	t0012	518	1	0	0	1	0	0	copy fasta	COPG2	chr7	130501238	130673748
COPRS_chr17_31846871_31864244	1/1	t0001	314	361	96	65	148	12	38	copy fasta	COPRS	chr17	31846871	31864244
COPRS_chr17_31846871_31864244	0/0	t0002	314	8	0	4	0	0	4	copy fasta	COPRS	chr17	31846871	31864244
COPRS_chr17_31846871_31864244	0/0	t0003	314	2	0	0	2	0	0	copy fasta	COPRS	chr17	31846871	31864244
COPRS_chr17_31846871_31864244	0/0	t0004	314	1	0	1	0	0	0	copy fasta	COPRS	chr17	31846871	31864244
COPS2_chr15_49117727_49160599	0/0	t0001	5245	135	14	23	81	4	13	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/1	t0002	5245	72	4	15	37	6	9	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0003	5244	36	8	11	2	3	12	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	1/0	t0004	5245	35	33	1	0	0	0	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0005	5245	31	10	2	14	0	5	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0006	5245	14	0	1	11	0	2	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0007	5245	10	0	4	6	0	0	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0008	5244	10	10	0	0	0	0	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0009	5245	7	6	1	0	0	0	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0010	5245	6	0	3	0	3	0	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0011	5245	3	0	0	3	0	0	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0012	5245	3	0	0	3	0	0	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0013	5245	3	0	0	3	0	0	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0014	5240	3	0	0	0	0	3	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0015	5245	2	0	0	0	0	2	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0016	5245	2	0	0	2	0	0	copy fasta	COPS2	chr15	49117727	49160599