Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADGRA3_chr4_22382376_22521066	0/0	t0003	612	3	3	0	0	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	t0004	612	2	0	0	2	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	t0005	612	2	2	0	0	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	t0006	612	1	0	0	0	0	1	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	t0007	612	1	1	0	0	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	t0008	612	1	1	0	0	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	t0009	612	1	1	0	0	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	t0010	612	1	1	0	0	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRB1_chr8_142444649_142550007	1/1	t0001	1266	171	43	52	50	10	14	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	t0002	1266	100	14	17	55	2	12	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	t0003	1266	20	19	1	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	t0004	1266	4	4	0	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	t0005	1266	4	0	0	4	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	t0006	1266	2	0	2	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	t0007	1266	1	1	0	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	t0008	1266	1	0	0	0	1	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	t0009	1266	1	0	0	0	1	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	t0010	1266	1	0	0	0	0	1	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	t0011	1266	1	0	0	0	0	1	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	t0012	1266	1	0	0	1	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	t0013	1266	1	1	0	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	t0014	1266	1	1	0	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	t0015	1266	1	1	0	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB2_chr1_31722117_31769340	1/1	t0001	951	226	61	46	76	14	27	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	t0002	951	34	24	4	6	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	t0003	951	7	0	0	7	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	t0004	951	4	0	1	0	0	3	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	t0005	955	4	3	1	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	t0006	955	2	0	0	2	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	t0007	951	1	0	0	1	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	t0008	951	1	1	0	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	t0009	951	1	1	0	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB3_chr6_68630282_69394506	1/1	t0001	1522	82	41	13	7	7	12	copy fasta	ADGRB3	chr6	68630282	69394506
ADGRB3_chr6_68630282_69394506	0/0	t0002	1522	34	16	12	3	1	2	copy fasta	ADGRB3	chr6	68630282	69394506
ADGRB3_chr6_68630282_69394506	0/0	t0003	1522	1	1	0	0	0	0	copy fasta	ADGRB3	chr6	68630282	69394506
ADGRB3_chr6_68630282_69394506	0/0	t0004	1522	1	1	0	0	0	0	copy fasta	ADGRB3	chr6	68630282	69394506
ADGRB3_chr6_68630282_69394506	0/0	t0005	1522	1	1	0	0	0	0	copy fasta	ADGRB3	chr6	68630282	69394506
ADGRB3_chr6_68630282_69394506	0/0	t0006	1522	1	0	1	0	0	0	copy fasta	ADGRB3	chr6	68630282	69394506
ADGRD1_chr12_130948907_131146469	1/0	t0001	2766	43	18	10	7	1	6	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/1	t0002	2766	37	5	11	8	6	6	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0003	2766	28	4	7	11	0	6	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0004	2767	23	10	9	0	1	3	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0005	2766	12	0	5	6	0	1	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0006	2767	9	2	4	1	1	1	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0007	2766	7	5	1	1	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0008	2766	7	4	2	0	1	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0009	2766	6	0	1	4	0	1	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0010	2766	6	0	1	5	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0011	2766	5	0	0	5	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0012	2767	5	1	1	1	1	1	copy fasta	ADGRD1	chr12	130948907	131146469