JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COPS2_chr15_49117727_49160599	0/0	t0017	5245	2	0	1	0	0	1	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0018	5245	2	2	0	0	0	0	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0019	5245	2	2	0	0	0	0	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0020	5245	2	0	0	2	0	0	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0021	5245	1	0	0	1	0	0	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0022	5245	1	1	0	0	0	0	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0023	5245	1	0	0	1	0	0	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0024	5245	1	1	0	0	0	0	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0025	5245	1	0	0	1	0	0	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0026	5245	1	0	0	0	0	1	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0027	5245	1	1	0	0	0	0	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0028	5245	1	0	1	0	0	0	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0029	5245	1	0	0	1	0	0	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0030	5245	1	0	0	0	0	1	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0031	5245	1	0	0	1	0	0	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0032	5245	1	0	0	1	0	0	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0033	5245	1	0	0	1	0	0	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0034	5245	1	0	0	1	0	0	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0035	5245	1	1	0	0	0	0	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0036	5244	1	0	0	0	0	1	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0037	5244	1	0	1	0	0	0	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	t0038	5244	1	1	0	0	0	0	copy fasta	COPS2	chr15	49117727	49160599
COPS3_chr17_17241616_17286246	1/1	t0001	543	346	86	68	136	12	42	copy fasta	COPS3	chr17	17241616	17286246
COPS3_chr17_17241616_17286246	0/0	t0002	539	3	3	0	0	0	0	copy fasta	COPS3	chr17	17241616	17286246
COPS3_chr17_17241616_17286246	0/0	t0003	543	2	2	0	0	0	0	copy fasta	COPS3	chr17	17241616	17286246
COPS3_chr17_17241616_17286246	0/0	t0004	543	1	1	0	0	0	0	copy fasta	COPS3	chr17	17241616	17286246
COPS4_chr4_83030183_83080818	1/1	t0001	431	371	89	48	182	8	42	copy fasta	COPS4	chr4	83030183	83080818
COPS4_chr4_83030183_83080818	0/0	t0002	431	1	1	0	0	0	0	copy fasta	COPS4	chr4	83030183	83080818
COPS5_chr8_67038079_67067133	1/1	t0001	292	274	78	47	105	12	30	copy fasta	COPS5	chr8	67038079	67067133
COPS5_chr8_67038079_67067133	0/0	t0002	292	15	5	5	1	0	4	copy fasta	COPS5	chr8	67038079	67067133
COPS5_chr8_67038079_67067133	0/0	t0003	292	2	2	0	0	0	0	copy fasta	COPS5	chr8	67038079	67067133
COPS5_chr8_67038079_67067133	0/0	t0004	267	1	1	0	0	0	0	copy fasta	COPS5	chr8	67038079	67067133
COPS6_chr7_100083969_100097187	1/1	t0001	421	388	82	64	179	17	44	copy fasta	COPS6	chr7	100083969	100097187
COPS6_chr7_100083969_100097187	0/0	t0002	421	23	3	4	9	1	6	copy fasta	COPS6	chr7	100083969	100097187
COPS6_chr7_100083969_100097187	0/0	t0003	421	10	7	3	0	0	0	copy fasta	COPS6	chr7	100083969	100097187
COPS6_chr7_100083969_100097187	0/0	t0004	421	1	0	1	0	0	0	copy fasta	COPS6	chr7	100083969	100097187
COPS7A_chr12_6719046_6736865	0/1	t0001	1004	305	51	55	155	12	31	copy fasta	COPS7A	chr12	6719046	6736865
COPS7A_chr12_6719046_6736865	1/0	t0002	1004	82	7	22	36	5	11	copy fasta	COPS7A	chr12	6719046	6736865
COPS7A_chr12_6719046_6736865	0/0	t0003	1005	44	15	2	25	1	1	copy fasta	COPS7A	chr12	6719046	6736865
COPS7A_chr12_6719046_6736865	0/0	t0004	1005	12	9	3	0	0	0	copy fasta	COPS7A	chr12	6719046	6736865
COPS7A_chr12_6719046_6736865	0/0	t0005	1004	9	9	0	0	0	0	copy fasta	COPS7A	chr12	6719046	6736865
COPS7A_chr12_6719046_6736865	0/0	t0006	1004	6	0	1	5	0	0	copy fasta	COPS7A	chr12	6719046	6736865
COPS7A_chr12_6719046_6736865	0/0	t0007	1004	4	3	1	0	0	0	copy fasta	COPS7A	chr12	6719046	6736865
COPS7A_chr12_6719046_6736865	0/0	t0008	1004	2	2	0	0	0	0	copy fasta	COPS7A	chr12	6719046	6736865
COPS7A_chr12_6719046_6736865	0/0	t0009	1004	1	0	1	0	0	0	copy fasta	COPS7A	chr12	6719046	6736865
COPS7A_chr12_6719046_6736865	0/0	t0010	1005	1	0	0	0	0	1	copy fasta	COPS7A	chr12	6719046	6736865
COPS7A_chr12_6719046_6736865	0/0	t0011	1004	1	0	0	0	0	1	copy fasta	COPS7A	chr12	6719046	6736865
COPS7A_chr12_6719046_6736865	0/0	t0012	1004	1	0	0	1	0	0	copy fasta	COPS7A	chr12	6719046	6736865
COPS7A_chr12_6719046_6736865	0/0	t0013	1004	1	0	1	0	0	0	copy fasta	COPS7A	chr12	6719046	6736865
COPS7A_chr12_6719046_6736865	0/0	t0014	1004	1	0	0	1	0	0	copy fasta	COPS7A	chr12	6719046	6736865