JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COPS7A_chr12_6719046_6736865	0/0	t0015	1005	1	0	0	0	0	1	copy fasta	COPS7A	chr12	6719046	6736865
COPS7A_chr12_6719046_6736865	0/0	t0016	1004	1	0	0	1	0	0	copy fasta	COPS7A	chr12	6719046	6736865
COPS7A_chr12_6719046_6736865	0/0	t0017	1005	1	0	0	1	0	0	copy fasta	COPS7A	chr12	6719046	6736865
COPS7A_chr12_6719046_6736865	0/0	t0018	1004	1	0	0	1	0	0	copy fasta	COPS7A	chr12	6719046	6736865
COPS7B_chr2_231781445_231814253	0/0	t0001	1723	54	2	10	31	2	9	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0002	1723	40	21	8	6	2	3	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0003	1725	32	15	9	1	4	3	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0004	1717	30	2	6	15	3	4	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0005	1723	17	2	2	12	0	1	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0006	1727	15	12	0	2	0	1	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	1/1	t0007	1719	13	2	2	1	1	5	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0008	1721	11	7	3	0	0	1	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0009	1727	10	1	2	6	1	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0010	1725	9	0	4	2	0	3	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0011	1721	9	0	0	7	0	2	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0012	1719	9	0	2	5	0	2	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0013	1725	9	0	0	7	0	2	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0014	1721	8	0	1	5	1	1	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0015	1715	7	5	1	0	1	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0016	1713	7	7	0	0	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0017	1719	6	0	4	2	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0018	1721	5	0	3	1	0	1	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0019	1720	5	5	0	0	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0020	1723	5	0	0	5	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0021	1731	4	1	1	0	1	1	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0022	1729	4	3	0	1	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0023	1719	4	0	1	2	1	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0024	1715	3	1	1	1	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0025	1709	3	3	0	0	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0026	1725	3	0	0	3	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0027	1723	2	0	0	0	0	2	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0028	1721	2	2	0	0	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0029	1723	1	1	0	0	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0030	1719	1	1	0	0	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0031	1715	1	0	1	0	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0032	1725	1	0	0	0	0	1	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0033	1733	1	0	0	0	0	1	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0034	1724	1	0	0	1	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0035	1732	1	0	0	1	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0036	1730	1	1	0	0	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0037	1722	1	1	0	0	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0038	1727	1	1	0	0	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0039	1709	1	0	1	0	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0040	1719	1	0	0	0	1	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0041	1729	1	0	0	1	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0042	1724	1	0	0	0	0	1	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0043	1719	1	0	1	0	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0044	1705	1	0	1	0	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0045	1731	1	0	0	1	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0046	1724	1	0	1	0	0	0	copy fasta	COPS7B	chr2	231781445	231814253