JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COPS7B_chr2_231781445_231814253	0/0	t0047	1723	1	0	1	0	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0048	1719	1	0	0	1	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0049	1723	1	0	0	1	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	t0050	1719	1	0	0	1	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS8_chr2_237080889_237105474	1/1	t0001	2809	230	18	48	117	7	38	copy fasta	COPS8	chr2	237080889	237105474
COPS8_chr2_237080889_237105474	0/0	t0002	2809	50	34	5	7	1	3	copy fasta	COPS8	chr2	237080889	237105474
COPS8_chr2_237080889_237105474	0/0	t0003	2809	10	9	1	0	0	0	copy fasta	COPS8	chr2	237080889	237105474
COPS8_chr2_237080889_237105474	0/0	t0004	2810	8	8	0	0	0	0	copy fasta	COPS8	chr2	237080889	237105474
COPS8_chr2_237080889_237105474	0/0	t0005	2809	6	6	0	0	0	0	copy fasta	COPS8	chr2	237080889	237105474
COPS8_chr2_237080889_237105474	0/0	t0006	2807	5	5	0	0	0	0	copy fasta	COPS8	chr2	237080889	237105474
COPS8_chr2_237080889_237105474	0/0	t0007	2808	5	3	2	0	0	0	copy fasta	COPS8	chr2	237080889	237105474
COPS8_chr2_237080889_237105474	0/0	t0008	2809	4	0	3	0	0	1	copy fasta	COPS8	chr2	237080889	237105474
COPS8_chr2_237080889_237105474	0/0	t0009	2809	3	2	1	0	0	0	copy fasta	COPS8	chr2	237080889	237105474
COPS8_chr2_237080889_237105474	0/0	t0010	2809	3	0	1	0	2	0	copy fasta	COPS8	chr2	237080889	237105474
COPS8_chr2_237080889_237105474	0/0	t0011	2809	3	0	3	0	0	0	copy fasta	COPS8	chr2	237080889	237105474
COPS8_chr2_237080889_237105474	0/0	t0012	2809	3	3	0	0	0	0	copy fasta	COPS8	chr2	237080889	237105474
COPS8_chr2_237080889_237105474	0/0	t0013	2809	2	2	0	0	0	0	copy fasta	COPS8	chr2	237080889	237105474
COPS8_chr2_237080889_237105474	0/0	t0014	2809	2	2	0	0	0	0	copy fasta	COPS8	chr2	237080889	237105474
COPS8_chr2_237080889_237105474	0/0	t0015	2809	2	0	0	2	0	0	copy fasta	COPS8	chr2	237080889	237105474
COPS8_chr2_237080889_237105474	0/0	t0016	2809	2	0	2	0	0	0	copy fasta	COPS8	chr2	237080889	237105474
COPS8_chr2_237080889_237105474	0/0	t0017	2809	1	0	0	1	0	0	copy fasta	COPS8	chr2	237080889	237105474
COPS8_chr2_237080889_237105474	0/0	t0018	2809	1	0	1	0	0	0	copy fasta	COPS8	chr2	237080889	237105474
COPS8_chr2_237080889_237105474	0/0	t0019	2809	1	1	0	0	0	0	copy fasta	COPS8	chr2	237080889	237105474
COPS8_chr2_237080889_237105474	0/0	t0020	2809	1	1	0	0	0	0	copy fasta	COPS8	chr2	237080889	237105474
COPS8_chr2_237080889_237105474	0/0	t0021	2809	1	0	0	1	0	0	copy fasta	COPS8	chr2	237080889	237105474
COPS8_chr2_237080889_237105474	0/0	t0022	2809	1	1	0	0	0	0	copy fasta	COPS8	chr2	237080889	237105474
COPS8_chr2_237080889_237105474	0/0	t0023	2809	1	1	0	0	0	0	copy fasta	COPS8	chr2	237080889	237105474
COPS8_chr2_237080889_237105474	0/0	t0024	2809	1	0	1	0	0	0	copy fasta	COPS8	chr2	237080889	237105474
COPS8_chr2_237080889_237105474	0/0	t0025	2809	1	1	0	0	0	0	copy fasta	COPS8	chr2	237080889	237105474
COPS8_chr2_237080889_237105474	0/0	t0026	2809	1	1	0	0	0	0	copy fasta	COPS8	chr2	237080889	237105474
COPS9_chr2_240125828_240141305	1/1	t0001	245	414	92	69	186	16	49	copy fasta	COPS9	chr2	240125828	240141305
COPS9_chr2_240125828_240141305	0/0	t0002	245	21	0	1	20	0	0	copy fasta	COPS9	chr2	240125828	240141305
COPS9_chr2_240125828_240141305	0/0	t0003	245	5	3	2	0	0	0	copy fasta	COPS9	chr2	240125828	240141305
COPS9_chr2_240125828_240141305	0/0	t0004	245	1	0	0	0	0	1	copy fasta	COPS9	chr2	240125828	240141305
COPS9_chr2_240125828_240141305	0/0	t0005	245	1	1	0	0	0	0	copy fasta	COPS9	chr2	240125828	240141305
COPZ1_chr12_54320131_54356846	1/1	t0001	1357	260	60	51	105	15	27	copy fasta	COPZ1	chr12	54320131	54356846
COPZ1_chr12_54320131_54356846	0/0	t0002	1356	69	10	13	40	1	5	copy fasta	COPZ1	chr12	54320131	54356846
COPZ1_chr12_54320131_54356846	0/0	t0003	1357	12	2	1	9	0	0	copy fasta	COPZ1	chr12	54320131	54356846
COPZ1_chr12_54320131_54356846	0/0	t0004	1356	9	9	0	0	0	0	copy fasta	COPZ1	chr12	54320131	54356846
COPZ1_chr12_54320131_54356846	0/0	t0005	1357	4	4	0	0	0	0	copy fasta	COPZ1	chr12	54320131	54356846
COPZ1_chr12_54320131_54356846	0/0	t0006	1357	4	4	0	0	0	0	copy fasta	COPZ1	chr12	54320131	54356846
COPZ1_chr12_54320131_54356846	0/0	t0007	1357	2	0	0	2	0	0	copy fasta	COPZ1	chr12	54320131	54356846
COPZ1_chr12_54320131_54356846	0/0	t0008	1357	2	2	0	0	0	0	copy fasta	COPZ1	chr12	54320131	54356846
COPZ1_chr12_54320131_54356846	0/0	t0009	1357	1	0	0	0	0	1	copy fasta	COPZ1	chr12	54320131	54356846
COPZ1_chr12_54320131_54356846	0/0	t0010	1356	1	0	0	1	0	0	copy fasta	COPZ1	chr12	54320131	54356846
COPZ1_chr12_54320131_54356846	0/0	t0011	1356	1	0	1	0	0	0	copy fasta	COPZ1	chr12	54320131	54356846
COPZ1_chr12_54320131_54356846	0/0	t0012	1357	1	1	0	0	0	0	copy fasta	COPZ1	chr12	54320131	54356846
COPZ1_chr12_54320131_54356846	0/0	t0013	1357	1	0	0	0	0	1	copy fasta	COPZ1	chr12	54320131	54356846
COPZ1_chr12_54320131_54356846	0/0	t0014	1357	1	0	0	1	0	0	copy fasta	COPZ1	chr12	54320131	54356846
COPZ2_chr17_48021167_48042797	1/1	t0001	282	296	73	59	124	10	28	copy fasta	COPZ2	chr17	48021167	48042797